Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23570 358 / 2e-123 SGT1A phosphatase-related (.1.2.3) AT4G11260 350 / 2e-120 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) AT1G04190 63 / 6e-11 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09420 59 / 2e-09 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G62740 55 / 5e-08 Hop2 Hop2, stress-inducible protein, putative (.1) AT3G17970 54 / 6e-08 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT4G12400 50 / 1e-06 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G14950 47 / 1e-05 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT1G12270 47 / 1e-05 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G53300 44 / 0.0001 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024680 [exp] 552 / 0 AT4G11260 459 / 2e-162 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10039297 [exp] 367 / 2e-126 AT4G11260 409 / 5e-143 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10027540 [exp] 366 / 2e-126 AT4G11260 412 / 2e-144 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10021905 [exp] 61 / 3e-10 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041189 [exp] 61 / 5e-10 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042001 [exp] 60 / 1e-09 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 59 / 3e-09 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10028154 [exp] 52 / 3e-07 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 52 / 4e-07 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G149800 [exp] 352 / 7e-121 AT4G11260 419 / 1e-146 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.004G071100 [exp] 340 / 3e-116 AT4G11260 385 / 1e-133 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.008G156500 [exp] 62 / 7e-11 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G141800 [exp] 62 / 3e-10 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.010G082900 [exp] 61 / 4e-10 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G205300 [exp] 59 / 3e-09 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.012G046900 [exp] 57 / 1e-08 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 56 / 3e-08 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.005G177400 [exp] 51 / 6e-07 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G392601 [exp] 50 / 8e-07 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain CL0190 [flax] [poplar] PF05002 [flax] [poplar] SGS SGS domain
Representative CDS sequence Show only first row Show all	>Lus10032305 pacid=23168663 polypeptide=Lus10032305 locus=Lus10032305.g ID=Lus10032305.BGIv1.0 annot-version=v1.0 ATGGCGAACGAATTTGCAGAGAAGGCGAAGGAAGCGTTCTTGGACGACGACTTTCAGCTGGCAGCTGATTTGTACTCAAAGGCCATCGACTTGAACCCTA GTAACCCCGATTACTTTGCCGACCGTGCTCAGGCCAACATCAAACTCTATCAATTCACTAAGGCTGTTGCTGATGCAAACAGGGCGATTCTGTTGGATCC TAATATGGTGAAGGCATATCTGCGCAAGGGTACTGCCTGCATTAAGCTTGAGGAGTATCAGACAGCTAAGGCAGCACTTGAGAAAGGTGCTTCCATAGCT CCTGTAGACCAGAGTCGGAGATTCACCAAATTGATTGAAGAATGCGACCGAAGCATAGCGGACGAGTCTGCCCATCTTAGCAACGGTTTAGCACAAAGTA ACATCTCGTCTACAACCGTTCCATCTGCTTCTGTAACTGCTCATCCAGTCGAGGGAATCCCATCTGACAATGTTACTGTCGATTTTGGTGATCAGATTCT TAATGTTACCATAGATGTTCCTGGAGAGGAGAGTTACCAATTTCAACCTCGACTGTTTGCCAAAGTCGTACCTGCCAACTGCAGGTATCAGGTGCTCTCG ACTAAGATTGAGGTCCGCCTTGCCAAAGTTGAAACTATTCATTGGACGTCTCTTGAGTATACGAACAATGCAATTGTCGCCCCTCTACGAAACGTGCCTG CCACCGTGTCTCAAAGGCCTGCATACCCATCATCGAAATCTCGAGGCAAAGATTGGGATAAGTTGGAAGCACAAGTGAAAAAAGAGGAAAAAGATGAGAA GCTGGATGGTGATGCTGCATTGAACAAGTTTTTCAGGGAAATCTACCAAAATGCTGACGAGGACATGAGAAGGGCTATGAGCAAATCTTTCGTCGAGTCT AGTGGGACAGTGCTATCAACTGACTGGAAAGATGTGGGTTCGAAGAAGATCGAAGGCAGTGCCCCGGATGGCATGGAGATGAGGAAGTGGGAGTACTGA
AA sequence Show only first row Show all	>Lus10032305 pacid=23168663 polypeptide=Lus10032305 locus=Lus10032305.g ID=Lus10032305.BGIv1.0 annot-version=v1.0 MANEFAEKAKEAFLDDDFQLAADLYSKAIDLNPSNPDYFADRAQANIKLYQFTKAVADANRAILLDPNMVKAYLRKGTACIKLEEYQTAKAALEKGASIA PVDQSRRFTKLIEECDRSIADESAHLSNGLAQSNISSTTVPSASVTAHPVEGIPSDNVTVDFGDQILNVTIDVPGEESYQFQPRLFAKVVPANCRYQVLS TKIEVRLAKVETIHWTSLEYTNNAIVAPLRNVPATVSQRPAYPSSKSRGKDWDKLEAQVKKEEKDEKLDGDAALNKFFREIYQNADEDMRRAMSKSFVES SGTVLSTDWKDVGSKKIEGSAPDGMEMRKWEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10032305 [exp]	0	1
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	1.0	0.9083
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	2.8	0.8867
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Lus10020540 [exp]	5.7	0.8479
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	14.5	0.8461
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10033750 [exp]	16.1	0.8630
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	19.2	0.8784
AT5G15400			U-box domain-containing protei...		Lus10005222 [exp]	19.3	0.8210
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	24.1	0.8559
AT1G68140			Protein of unknown function (D...		Lus10004940 [exp]	25.3	0.8464
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10019104 [exp]	25.5	0.8078

Compare expression of checked genes

Lus10032305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.