Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 766 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 707 / 0 EFR EF-TU receptor (.1) AT3G47090 704 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 686 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 677 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 471 / 7e-148 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 444 / 8e-140 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 429 / 1e-133 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G44700 427 / 7e-131 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 422 / 2e-130 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 1406 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030846 [exp] 1345 / 0 AT3G47570 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1206 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1201 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1174 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1172 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1166 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 1152 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1151 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 924 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 912 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 905 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 895 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 880 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 880 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 876 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 869 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 868 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 867 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032306 pacid=23168524 polypeptide=Lus10032306 locus=Lus10032306.g ID=Lus10032306.BGIv1.0 annot-version=v1.0 ATGAGTTCCCGTAGTCTGAGTGTTATTGCTGCAGCTGCAGCAGCAGTACTTGTTCAGCTGTTGTGCTTTTGCTCTTGTTATTGTTCCTCCTTTGGAAGTA ATGAGACAGATCGTCTGGCTCTACTAAGTTTCAAGTCCATGATTTCTGACCCTTTGGGTGCGTTGAGCTCATGGAATGATTCCACTCACTTTTGTCGGTG GTATGGTGTGTCTTGCTCCAAAAAGCACTATGGTAAAGTCTCTGCCCTTTACTTGCCATATCAAGAACTTTCGGGTTCTATCTCGCCGCACATTGGCAAC TTGAGCTTCCTGAAGGTGCTGAATCTCTCCAACAACATGTTCATTGGGGAAATCCCTCATGAAATCGGCCGTCTTCGTAGATTGCAAAAGTTGGTGCTTT ACAACAACTCACTTGGCGGTGAAATCCCGCCCAACATCTCAGAGTGCTCTGCTCTTACTACTTTCTGGGTAAAACGAAACAAGCTGGTGGGTGGACTGCC ATGGCAGCTTGGCCTGTTGAACAAGCTCCAATATTTTTCTGTAAGTGTAAACAACTTGAGTGGAAGCATCCCTCCTTCTTTTGGCAACTTGTCATCTCTT CGAGAGTTCCGAGCAGCTACAAACGAAATGAGTGGGAGACTTCCTCACGCCCTAGGCCAATTGAAAAGTCTCCAACATCTAATCCTGGTTCAGAATAGCT TATCTGGTGAAATCCCTGCTTCCATTTTCAACATTTCTTCTCTCGTAGAAATATGGTTTGGAGGAAACCAATTCAACGGCGGTCTTCCTCGGAATCTTGG AATATCACTTCCAAATCTTGAGATGTTCGATGTGTTTGCTAACTACTTCACTGGTAGTATTCCACCTTCCCTATCGAATTCCTCCAATTTGGTTATGCTA CAACTCGACGGCAACAATTTTACAGGAAGCGTTCCTAGTATGAAAAGCTCTAACAAGCTTCGGAGATACGTAATCCACTCCAACTCTCTAGGGAGCGGGT TGGCCGGTGATCTAGATTTCCTCTCTTCTTTGACTAATGCTACAAGTTTGGAAGTCCTGCATATCGGTGTCAACAACTTGGGAGGCAGCTTACCGAAGCA TATAGCCAATTTGTCCAGCAGCCTGAATTATCTGGCCTTCTGTCAAAACAAAATATCAGGAAACATTCCAAGCGACATACGACAACTTGTCAGCTTGGAG GAGCTCGTGGCATATACTAATGTCCTGTCAGGTACAATCCCACACAGCATCGGAAATTTACACTCTCTGAAGCATTTGTATTTGGATAACAACCAACTTT CAGGATATATTCCACCGGCTATAGGAAACTTGACAGAACTTATTGAAGTGAGTATGAGCAATAACCATTTACAAGGAGAAGTTCCTGTGTCTATCGGGGA CTGTCGAGAATTAATAATGCTAGACCTTGCTTTCAACGATCTTAGTGGTGCAATCCCGGCACGACTCTTGAGCGTCGCTTCCTTGTCAAGATTCCTGCTC TTGGCTAACAATAAATTCAGCGGTTCCATTCCCATGGAGGTGGGGAGTCTGAAAAACTTGGGTGCATTCGACCTGTCTCATAATAACTTGTCAGGCATCA TTCCGAGTAGTCTGGGTAGTTGTGTCAGTCTAGAGTTTCTGCAGTTGCGAGGAAATCTCCTACAAGGTACTATTCCGGAATCATTGAGCTCCTTGAGAGG TCTCCGGGTATTGGATCTCTCTTCCAATAACTTAACAGGTGAAATTCCAAACTTCTTGGAACAAATGGATATCTGCCAATCTTTGAACTTATCTTACAAC AACTTAGAGGGAGAAGTGCCTCATCAAGGAGTCTTCAAAAATACTAGTATCATCTCTCTTGTTGAAAATAACAAGCTCTGTGGGGGAATAGATGAACTTA AATTTCCTCCATGTCATGACTTCCCCAGACAGTCAAAAAAGACGTTCAACCATAAGTGGAAGATTGTAATATCAGCAATCTCTGGTCTAGCTTTCCTTGC ATTAATGGCTTCTTGCTTGTTTATCTTTTGGAAAAGGGGAAAACAAATTTCAGTTCCGGCCAATACTACTCTGCAATTACAACTACCTTACCAAAAGCTC TACAAAGCTACAAATGGATTCTCCTCTGAAAATCTTATTGGTGTGGGTAGCTTTGGCTCTGTGTACAAGGGAGTCCTTAATGATAGTCATACGGCCAATA CAAATATCGCCGTGAAGGTATTCAATCTCCAGCGTCATGGCGCTTCCAGAAGTTTTATGGCAGAATGTGAAGCTTTAAGGAACATCAAACATCGAAATCT TGTCAAGATATTGACCGTGTGTTCAGGTGTTGACCACCAGGGAAATGATTTCAAGGCTCTCATCTATGAGTTATTAACTAATGGATGCTTGGATGAGTGG TTGCATCGGCCAATTGAAAAAATGGAGGATGAGTCCACAAGGAGACTCTGTTTCCTCCGGAGGGTAGATGTTGCCATTGATATTGCTTCTGCCATGGATT ATCTTCACAACTATTGTGGAGCTCCAATTGTTCATTGTGATCTTAAGCCGAACAACATACTTCTTGACGAGGACATGGTGGCTCATGTTGCCGATTTTGG ATTGGCAAGAATCCTTTCGGAACATGTAGAGCCATCTTCAAGCTCTATTTTTATAAAGGGGACTATTGGTTATGCAGCTCCAGAATATGGAATGGGAAAT GAAGTTTCATTGGAAGGTGATGTCTACAGCTATGGTATCCTATTGCTTGAGATGTTTACTGGGAGAAACCCAACCGAAAAGACTTTCAAAGAAGGTTCAA ACCTTCATAACAATGTTAAAAGCGCTTTGATTGAACAACGAACAACTGAAGTTGTTGATCCAATTCTACTCAATGAACTGCATGGTGACATGACAACCTG TTACAACGATTGCATCAGTAAAACCTCAAAGGAAACAAGAAGCGAAGTAGAGAAGCTACTAAATTCAATTCTCGAAATTGGTATCACTTGTTCGTCAAAC TTACCAGAAGACAGAGGGAGTATGAGTGTAGCTTTATTGAAGCTTACCGCTATAAGAAAAATCTTCCATGAATTGTTATAA
AA sequence Show only first row Show all	>Lus10032306 pacid=23168524 polypeptide=Lus10032306 locus=Lus10032306.g ID=Lus10032306.BGIv1.0 annot-version=v1.0 MSSRSLSVIAAAAAAVLVQLLCFCSCYCSSFGSNETDRLALLSFKSMISDPLGALSSWNDSTHFCRWYGVSCSKKHYGKVSALYLPYQELSGSISPHIGN LSFLKVLNLSNNMFIGEIPHEIGRLRRLQKLVLYNNSLGGEIPPNISECSALTTFWVKRNKLVGGLPWQLGLLNKLQYFSVSVNNLSGSIPPSFGNLSSL REFRAATNEMSGRLPHALGQLKSLQHLILVQNSLSGEIPASIFNISSLVEIWFGGNQFNGGLPRNLGISLPNLEMFDVFANYFTGSIPPSLSNSSNLVML QLDGNNFTGSVPSMKSSNKLRRYVIHSNSLGSGLAGDLDFLSSLTNATSLEVLHIGVNNLGGSLPKHIANLSSSLNYLAFCQNKISGNIPSDIRQLVSLE ELVAYTNVLSGTIPHSIGNLHSLKHLYLDNNQLSGYIPPAIGNLTELIEVSMSNNHLQGEVPVSIGDCRELIMLDLAFNDLSGAIPARLLSVASLSRFLL LANNKFSGSIPMEVGSLKNLGAFDLSHNNLSGIIPSSLGSCVSLEFLQLRGNLLQGTIPESLSSLRGLRVLDLSSNNLTGEIPNFLEQMDICQSLNLSYN NLEGEVPHQGVFKNTSIISLVENNKLCGGIDELKFPPCHDFPRQSKKTFNHKWKIVISAISGLAFLALMASCLFIFWKRGKQISVPANTTLQLQLPYQKL YKATNGFSSENLIGVGSFGSVYKGVLNDSHTANTNIAVKVFNLQRHGASRSFMAECEALRNIKHRNLVKILTVCSGVDHQGNDFKALIYELLTNGCLDEW LHRPIEKMEDESTRRLCFLRRVDVAIDIASAMDYLHNYCGAPIVHCDLKPNNILLDEDMVAHVADFGLARILSEHVEPSSSSIFIKGTIGYAAPEYGMGN EVSLEGDVYSYGILLLEMFTGRNPTEKTFKEGSNLHNNVKSALIEQRTTEVVDPILLNELHGDMTTCYNDCISKTSKETRSEVEKLLNSILEIGITCSSN LPEDRGSMSVALLKLTAIRKIFHELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10026415 [exp]	1.0	0.9598
AT3G47570			Leucine-rich repeat protein ki...		Lus10011387 [exp]	2.0	0.9380
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	4.5	0.9128
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10009582 [exp]	4.6	0.9200
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	6.3	0.9063
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10042239 [exp]	6.3	0.8700
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	6.6	0.8971
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	6.7	0.9077
AT3G47570			Leucine-rich repeat protein ki...		Lus10011386 [exp]	7.1	0.8616
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	12.1	0.9070

Compare expression of checked genes

Lus10032306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.