Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41580 385 / 1e-122 RING/U-box superfamily protein (.1) AT1G08910 310 / 1e-93 EMB3001 zinc ion binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024682 [exp] 1211 / 0 AT5G41580 381 / 8e-121 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133000 [exp] 482 / 3e-158 AT5G41580 466 / 1e-151 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF02891 [flax] [poplar] zf-MIZ MIZ/SP-RING zinc finger
Representative CDS sequence Show only first row Show all	>Lus10032307 pacid=23168510 polypeptide=Lus10032307 locus=Lus10032307.g ID=Lus10032307.BGIv1.0 annot-version=v1.0 ATGGCCAGAAACGTGGCTCCACCGGCGCAGGCTCCGGGCGCCCCTCTGACGGTAGCAGACCAGGCCACACTATCTGCATCGATGGTAAATTCTTTCAGAG TGATAGCAGTAGTCGACCGTCTAGCCCTGCATCTGCAACCTGGCCGAGAAAATAACTCCAGCGAGTTCTTCGGTCTGTGCCTCTCCCTCGCACGGGGCAT TGATTATGCTGTGGCAAACAATGAACCACCATCCAAAGTTCAAGAGCTGCCTTTGCTGTTGAAACAGGTATGCCTTCGCAGGAGCGATCCCTTATTAGAG GCAGCTATAATGGTGCTGATGATTTCTGTCAAGAATGCTTGTAAAGTTGGATGGTTTTCAGTCGAAGAGACTCAAGAACTTATTTCTCTAGCTAGCGAGA TTGCCAACAAGTTTCGCAGTCCTGGAGATATTAATGATGCTGCTGGTTATTCTCAAACTGCTGTCTCAACAGTTTTCTCCAGGTACTATCCTCGGATGAA TATGGGGGCGGTTCTTGCTTCCCTTGAAGTGCAGCCTGGTTTCGGTGCACATGTTCTGGATTTTCAAATTTCGAAGAAGTTGAACCATCCTCCACATGAA AAAATATTACTGTTTGTAGCCCAGACAGATAATCTAGACACATCAGCATGTATTGTAAGCCCACAACAAGTGAATTTTCTTGTTAATGGGAAAGGAGTCG ATAAAAGAACCAACGTGCAAATGGATACTGGCCCACAGTTACCAACTAACGTGACAGGAATGCTAAAATACGGAACAAATCTTCTTCAAGCTGTTGGCAC CTTCAATGGTAATTATGTAATACTTGTCGCTTTTGTAAGTAGTACGGCGCTGCCTGATCCTCCAGTGCTGATAGATTATGTCCAGTCAGAGCGCACTTCA TTGAATCCAGATTCTGACATCATTGAGGGACCTTCACGAATATCACTCAACTGTCCCATAAGCTTTTCAAGAATTAAAATTCCAGTGAAAGGGAGATTGT GCAAACATCTTCAGGTATTGAAAGAAGTCGGAGATAGTATCACTCATGTAAATATATCAGCTGATGGATCGTGGAAGGCTATCAGAGATGCTAATGAAAA TGAAGGACTCACGCCTGTAAGACATTCCCTGGGAGAAACTCATGAACAGCCAGATTCTAATGCTGAGTCACCTGCCACTCCCATGATTTTGGATCTTACT GAAGGTGGCGATGATCTGATGGATGAGTTATTAAGCAACTGGGATACTGTTGAAAGGAAACCTTCTCAGGCTTCTTCTCCTGGCCAAACTCCGGATCAAG AAAATCCCGCTTCTCAAATCAGAGATTGGGCCCATTTGATCTATCCTTCTGGGTCTGCTGCCGCGTCTGGATTCGGATCAGGCACGCAATTCCCAAATGC AGTTTCTCAGTCTTCTGCGATGATAACTGATGCAGTCGAGAACCAATCTCACGGCAATATTGATGCAGGTTCTCAGTTTGCTCCTCTTATCAGTAATTAT GCCGGGTTGCAGATGCAGCAACTAGGTATACCTGTTCGTAGAGTCCCAACAGCAGTCCAAGCCCTACCGGCCCAAAGTCAAAGTCAATTTCTGCCAACGA CGAGTACTAGTTATGTGAACTCCGTCAGTTCTAACTCTTCTCCATCAGTGACACCAAGTTCAAATGGTATTAGTCCCGTGCAGCGATTCTCGAGATCCCA TTATGATTTTCCTCGCGTCTCTAGCCCGGCTTCTTCTGCCCCTCGTCAAACTCTACCCCAGAACTTTAACCATCAACTTAGGTCACCTTCATACGGTCTA GCTCCTCGTTCGACTGCTATTCCAACTACAGGTCCACAGAGAGCATCGCCTGTGCCTCCCCGGATGCCTTCACCTGCAAGCCATCCCACCGCCAGGTCAT CATCTCCTCTGTCACGAACTTCGTCCTTCCAAGGGACACAAGCCATGGTTGGGGCTGCCCAGCAAGCAATAAATATGCTTAGACAGCCACCTGCTATAAG CAGGACTCCAGCAGCTGAGCTGAGGAACAATGTAACATCCCCTCAACCAGCCACTGCTACTACTCCCAACTCTGATTGGAGACCGACTGGTAGGATGCGT GGAAGCCTGGAAGGTCGTGATCTTGCCGAGATCAGGAACTTGGTACTCCAGTCAACCCAACAAACTCCAGGCGGCGGAGCAGCAGCATCGAATCCTACGT TGTCTGACGCGACTGCACCACCTCATCTCCGGGGTCTCTTTGGTCAGAAATAG
AA sequence Show only first row Show all	>Lus10032307 pacid=23168510 polypeptide=Lus10032307 locus=Lus10032307.g ID=Lus10032307.BGIv1.0 annot-version=v1.0 MARNVAPPAQAPGAPLTVADQATLSASMVNSFRVIAVVDRLALHLQPGRENNSSEFFGLCLSLARGIDYAVANNEPPSKVQELPLLLKQVCLRRSDPLLE AAIMVLMISVKNACKVGWFSVEETQELISLASEIANKFRSPGDINDAAGYSQTAVSTVFSRYYPRMNMGAVLASLEVQPGFGAHVLDFQISKKLNHPPHE KILLFVAQTDNLDTSACIVSPQQVNFLVNGKGVDKRTNVQMDTGPQLPTNVTGMLKYGTNLLQAVGTFNGNYVILVAFVSSTALPDPPVLIDYVQSERTS LNPDSDIIEGPSRISLNCPISFSRIKIPVKGRLCKHLQVLKEVGDSITHVNISADGSWKAIRDANENEGLTPVRHSLGETHEQPDSNAESPATPMILDLT EGGDDLMDELLSNWDTVERKPSQASSPGQTPDQENPASQIRDWAHLIYPSGSAAASGFGSGTQFPNAVSQSSAMITDAVENQSHGNIDAGSQFAPLISNY AGLQMQQLGIPVRRVPTAVQALPAQSQSQFLPTTSTSYVNSVSSNSSPSVTPSSNGISPVQRFSRSHYDFPRVSSPASSAPRQTLPQNFNHQLRSPSYGL APRSTAIPTTGPQRASPVPPRMPSPASHPTARSSSPLSRTSSFQGTQAMVGAAQQAINMLRQPPAISRTPAAELRNNVTSPQPATATTPNSDWRPTGRMR GSLEGRDLAEIRNLVLQSTQQTPGGGAAASNPTLSDATAPPHLRGLFGQK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	0	1
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10026837 [exp]	4.9	0.8734
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	5.5	0.8820
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	5.8	0.9005
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	6.2	0.9101
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10026612 [exp]	9.5	0.8788
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	10.0	0.8858
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	10.1	0.8922
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031904 [exp]	13.5	0.8657
AT1G05120			Helicase protein with RING/U-b...		Lus10030044 [exp]	14.8	0.8393
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	16.2	0.8918

Compare expression of checked genes

Lus10032307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.