Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64060 1380 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT4G11230 1050 / 0 Riboflavin synthase-like superfamily protein (.1) AT5G47910 949 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT1G19230 946 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G09090 941 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT5G51060 931 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G07390 897 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 885 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G60010 839 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 800 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028755 [exp] 1462 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 1389 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 1030 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10034890 [exp] 1019 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10029896 [exp] 983 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10043017 [exp] 972 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10022434 [exp] 966 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10032517 [exp] 963 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10020644 [exp] 938 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G098300 [exp] 1459 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.003G133300 [exp] 1454 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 1045 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.012G111600 [exp] 987 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.003G159800 [exp] 976 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.005G026200 [exp] 972 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.015G109800 [exp] 970 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.001G070900 [exp] 966 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.006G097200 [exp] 801 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 772 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10032308 pacid=23168672 polypeptide=Lus10032308 locus=Lus10032308.g ID=Lus10032308.BGIv1.0 annot-version=v1.0 ATGAAGCACGAGAGGCGATGGCGATCGGATTCATTACCTGGAAAGGGCAGAGCAGCTGACAGTAGTAGCAGCAGTAGTGCGGAGACATCTCCGGTGAGCG ATTCGAGAAGCTCGACAGCGGAAGCGAAGGAGGATTTCGTCGAGGTCACGCTCGATTTGCAGGACGACGATACGATTATACTCCGAAGCGTTGAGCCGGC GACGGTGATCAATATCGGCGGAGAGGAAGGCGATCACGAGAGCGGCGGAAGCGAGCTGTTACCTCGTTCGACTCCTACTTCCGCTCCGACTTCCAGATCT CCTACGATCAAGCGAAGCTCATCGAACAAACTGCGGCAGTTCTCGCAGGAGCTGAAGGCGGACGCGGTGGCGAAGGCGAGGCAATTCTCGCTGGATGTGA GAGCTGAGCTCCGTAGGTTCTCGAAGAGCCGTGGAGGAACAACGTCGCGTAATAATAATAATCCGGAGAACAACAACAATGGCGGGGGCGGTGTTTCTTT CTCGCTGGTTTTTTTTTCTTTGCTCTCGCTGCGGGGCCGTGTACCGCCTCGCCGCGCCCGGACCAGGACCAGCGCTCACAAAGCCCTGCGGGGTCTCAAG TTCATCAGTAAGAGGAAATCTCAAGGCGTCGAGGCGTGGAACGAAGTGGCCAGCAACTTCGATAAGCTCGCCGTGGACGGTTATATCCAACGCGCGGATT TCGCGCAATGCATAGGGATGAGAGACTCTAAAGAGTTTGCGCTCGAACTGTTCGACGGATTGAGCAGGAGAAGGAGGTTGAAGGTGGAGAAGCTTAGCAA GGAGGAGCTGTACGAATTCTGGGCACAAATCACCGATGACAGCTTCGACTCACGGCTCCAGATCTTCTTCGACATGGTGGACAAGAATGAAGATGGTAGA CTCACAGAGGAAGACGTAAAAGAGATTATTATGTTAAGTGCTTCGGCCAATAAATTATCAAGATTAAAGGAACAAGCAGAAGAATATGCAGCTTTGATCA TGGAAGAGTTGGACCCTGAAGGACTTGGCTACATCGAGCTATGGCAACTGGAGACGCTTCTTCTACAAAAGGACACATATCAAAACTACAGTCAAGCAAT GAGCTACACGAGCCAAGCCTTGAGCCAGAACTTGCAAGGGCTAAGAATGAGAAGCCCAATAAGGAGGATGAGCACAAACTTAGTCTACTTCTTGGAAATG AACTGGAAGAGGATCTGGGTGATATCCTTATGGATCATGATCATGATTGGACTGTTCGCATGGAAATTCTATCAGTACAAGCAGAAAGCTGCCTTCAATG TCATGGGTTACTGTCTCCTGACGGCAAAGGGTGCTGCGGAGACTCTGAAGTTCAATATGGCCCTTATTCTGCTTCCCGTGTGTAGAAACACCATCACTCG GCTCAGGTCCACACGGCTGGCTTATGTTTTCCCTTTCGATGACAACATAAACTTCCACAAGACTATTGCGGCAGCAATCGTAGTTGGCGTCATCCTTCAC GTTGGAAACCACCTTGCCTGTGATTTCCCGAGGCTTGAAAGCGCTTCTGCACGTGACTACGATCTGTACCTCAGAAAAGACTTCGGAGACCATAAACCAA GTTACATGAAATTAGTTAGGGGGGTAGAGGGCGTGACTGGAATCCTGATGGTAATTTTCATGGCAATTGCATTCACCCTGGCAACGAGATGGTTCAGGCG TAACCTCATTAAATTTCCCAAACCGTTTGACAGAATCACTGGGTTCAATGCCTTCTGGTATTCACACCACTTATTTGTCCTCGTCTATATATTGCTGGTC GTCCATGGTATATTCCTCTACCTGGTTCATCACTGGTATAAGAAAACGACGTGGATGTACCTCTCTGTCCCTGTGCTGCTTTACGCCGGAGAAAGAGCCC TCAGATTCTTCCGCTCTGGCTCCCATTCAGTCCGGCTTTTGAAGGTTGCAATTTACCCTGGCAACGTACTCACATTGCAAATGTCAAAGCCTAGTCAATT CCGTTACAAGAGCGGGCAGTACATGTTTGTTCAGTGCCCTGCTGTTTCTCCATTTGAATGGCACCCATTCTCGATAACTTCAGCTCCTGGAGATGACTAC CTTAGCGTCCACATACGACAGTTAGGTGACTGGACTCAAGAACTCAAAAGGGTATTCTCTGAGGTCTGCGAGCGTCCTATTTCTGGCAAAAGTGGCCTTC TTAGAGCTGATGAAACCACCAAGAGAAGTTTGCCGAAGCTGTTAATAGATGGGCCATACGGCGCTCCAGCGCAAGACTACAAGAAATACGACGTCTTGTT ACTGGTGGGGTTGGGTATCGGAGCAACGCCTTTCATCAGCATTCTCAAAGACTTGCTTAATAACATTGTTAAGATGGAGGAGATGGCTGATTCCGTAGCG GACTCCAGTAGAGGATCGGATCAGCTGAGCTTTACGAGCACCACCGACTTTATGAGACGGAGGAAGGCGTTGATAAAAACCACAAACGCTTACTTTTACT GGGTAACGAGGGAACAAGGCTCGTTCGATTGGTTCAAAGGCGTGATGAACGAGATTGCCGACCTTGATCAGAGGGGAGTACTTGAGATGCACAACTACTT AACCAGTGTATACGAGGAAGGGGACGCGAGATCGACTCTGATCACGATGGTGCAAGCATTGAACCACGCCAAGAACGGAGTGGACATTGTCTCGGGCACC AGGGTGCGGACTCATTTTGCGAGGCCTAACTGGAAGAAGGTGCTCTCGAAATTAAGCTCAAAGCACTGTAATGCAAGGATAGGGGTATTCTACTGTGGGG CACCAGTTCTGGCAAACGAACTTGGAAAGCTATGCTACGAGTTCAACCAGAAGGGTTCTACCAAGTTCGAATTCCACAAGGAGCATTTCTAG
AA sequence Show only first row Show all	>Lus10032308 pacid=23168672 polypeptide=Lus10032308 locus=Lus10032308.g ID=Lus10032308.BGIv1.0 annot-version=v1.0 MKHERRWRSDSLPGKGRAADSSSSSSAETSPVSDSRSSTAEAKEDFVEVTLDLQDDDTIILRSVEPATVINIGGEEGDHESGGSELLPRSTPTSAPTSRS PTIKRSSSNKLRQFSQELKADAVAKARQFSLDVRAELRRFSKSRGGTTSRNNNNPENNNNGGGGVSFSLVFFSLLSLRGRVPPRRARTRTSAHKALRGLK FISKRKSQGVEAWNEVASNFDKLAVDGYIQRADFAQCIGMRDSKEFALELFDGLSRRRRLKVEKLSKEELYEFWAQITDDSFDSRLQIFFDMVDKNEDGR LTEEDVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDTYQNYSQAMSYTSQALSQNLQGLRMRSPIRRMSTNLVYFLEM NWKRIWVISLWIMIMIGLFAWKFYQYKQKAAFNVMGYCLLTAKGAAETLKFNMALILLPVCRNTITRLRSTRLAYVFPFDDNINFHKTIAAAIVVGVILH VGNHLACDFPRLESASARDYDLYLRKDFGDHKPSYMKLVRGVEGVTGILMVIFMAIAFTLATRWFRRNLIKFPKPFDRITGFNAFWYSHHLFVLVYILLV VHGIFLYLVHHWYKKTTWMYLSVPVLLYAGERALRFFRSGSHSVRLLKVAIYPGNVLTLQMSKPSQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDY LSVHIRQLGDWTQELKRVFSEVCERPISGKSGLLRADETTKRSLPKLLIDGPYGAPAQDYKKYDVLLLVGLGIGATPFISILKDLLNNIVKMEEMADSVA DSSRGSDQLSFTSTTDFMRRRKALIKTTNAYFYWVTREQGSFDWFKGVMNEIADLDQRGVLEMHNYLTSVYEEGDARSTLITMVQALNHAKNGVDIVSGT RVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLANELGKLCYEFNQKGSTKFEFHKEHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10032308 [exp]	0	1
AT5G60010			ferric reductase-like transmem...		Lus10024683 [exp]	4.9	0.8234
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	6.5	0.8607
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	9.4	0.8620
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	10.3	0.8854
AT4G02090			unknown protein		Lus10010014 [exp]	10.5	0.8413
AT2G40370		LAC5	laccase 5 (.1)		Lus10017427 [exp]	12.0	0.8296
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	15.4	0.8449
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	19.7	0.8165
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	21.5	0.8490
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	23.0	0.8485

Compare expression of checked genes

Lus10032308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.