Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46150 47 / 8e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008296 [exp] 61 / 9e-12 ND / Lus10024689 [exp] 67 / 1e-11 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10036403 [exp] 59 / 7e-10 AT2G46150 156 / 8e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007904 [exp] 56 / 7e-09 AT2G46150 159 / 1e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006970 [exp] 49 / 4e-06 AT4G03220 74 / 3e-14 Protein with RNI-like/FBD-like domains (.1) Lus10020292 [exp] 47 / 2e-05 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10024618 [exp] 44 / 2e-05 ND / Lus10032255 [exp] 46 / 3e-05 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10032315 [exp] 45 / 9e-05 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133400 [exp] 76 / 2e-15 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 75 / 2e-15 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 55 / 2e-08 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10032309 pacid=23168525 polypeptide=Lus10032309 locus=Lus10032309.g ID=Lus10032309.BGIv1.0 annot-version=v1.0 ATGTCAATCAACCCGGAAGAAGAAATCACCAAATCCTCCTCCTCCTCCGATTTCACACAACCTCAACTCAAGCGCTCCGCTCCTCCATGGGAATTCTCCA GCCGCCGCTGCTCCTCCCGCATCGCCGCCCCAGATCTCGACGAATCCGCCTCACCTTCCTCCTCCTCCGCCGCCGCCGCCGAGATCCACCACCCCAACCC CAACCAAACATGGCTCCGCCTCTGCGGCTGCTCCTTCGCCGTCCTCCTCATGGCCGCCATGCTCTTCCTCATCCTCCTCTTCACCGCCTTCCGGATCAGG AACCCCACCGTCTCCCTCGCCGCAATCTCCGGCTCCCTCCTCACTAACCGCACCTCCACGATCTTCGCGGATGTCAAGCTCAGGAATCCGAATGCGGCGC CCTTCAGGTTCGTCGCCGGCGAGACCACGATTTACCACATGGAGACTGTCGTCGGGGAGGCAAGGACGCCTCCCGGAAAGGTGAAGGCGAGGGGGACGGC CCACTTAAAAGTGGCGGGGGGGGGGCGGGGGGTGTGTGGATTTGCGGGCGAGGGGGGGGGGGGAGGGAGGTGGGGAGGAGTAGGGCGCCGATTAGATTGT TCTGCATTACGCGGATTCCTGGGGATGTTAAGGTCATTACGAATATACTCATGGTGGTTAAAGTTAATTGCGAGGTTAATTATGATTATGTTACTGGGGA GCTTGCGGCTGGTGACTAGTGTTAGTGGCCTGGATACATATGCTCTATTGTCCCATGATGCTGATGCTTTAGATAATAGCTTTGAAGATAGCTTAGGTAT TCATCTAGAGAGAGAGAGCCAGCTCCTTATGGCAAAGAAGAAGATTGGTCGAATCAGCTTCCGAACAATGGAGTCGAACCTTCTCTCAGTCACATTTTTC AGTCACATTGAACTAAGCTCAATTGCTCATATACTTCATCAAGTCCTTAAACGACTCAAGTCCTTAAGTTTGGAGTATTCTCGTGGATCTCAGAACGTAC CACATCAAGTCATTCGTTACTTTCTCGAAAGCTCTAGTAATGAAGATAAGCAATTCACGGTTGAGGAGGTATGTTGTTCCTTTGGATTATATCTCATAGA GCTTAAGTTGTTCCAAATCTCCCCGCGATTATCAACTTCAACGATTTCAAATCTCCCAGCCCCGCGATCTCTTGCACACCTAGAAGCTCATACAAGTGTA GGATTCTCAACTTTCTTACCATCGACAGCGAAGGTAGTCTCTTCACTTTCAGTAACTTGA
AA sequence Show only first row Show all	>Lus10032309 pacid=23168525 polypeptide=Lus10032309 locus=Lus10032309.g ID=Lus10032309.BGIv1.0 annot-version=v1.0 MSINPEEEITKSSSSSDFTQPQLKRSAPPWEFSSRRCSSRIAAPDLDESASPSSSSAAAAEIHHPNPNQTWLRLCGCSFAVLLMAAMLFLILLFTAFRIR NPTVSLAAISGSLLTNRTSTIFADVKLRNPNAAPFRFVAGETTIYHMETVVGEARTPPGKVKARGTAHLKVAGGGRGVCGFAGEGGGGGRWGGVGRRLDC SALRGFLGMLRSLRIYSWWLKLIARLIMIMLLGSLRLVTSVSGLDTYALLSHDADALDNSFEDSLGIHLERESQLLMAKKKIGRISFRTMESNLLSVTFF SHIELSSIAHILHQVLKRLKSLSLEYSRGSQNVPHQVIRYFLESSSNEDKQFTVEEVCCSFGLYLIELKLFQISPRLSTSTISNLPAPRSLAHLEAHTSV GFSTFLPSTAKVVSSLSVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46150			Late embryogenesis abundant (L...		Lus10032309 [exp]	0	1
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	4.1	0.7815
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	12.0	0.7502
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	13.0	0.7548
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	14.0	0.7627
AT4G25030			unknown protein		Lus10041415 [exp]	15.7	0.7510
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	19.7	0.7426
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10021534 [exp]	27.9	0.7388
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10035262 [exp]	28.4	0.7431
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	28.6	0.7447
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	33.8	0.7460

Compare expression of checked genes

Lus10032309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.