Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42655 91 / 8e-24 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 42 / 4e-05 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024684 [exp] 202 / 2e-60 AT5G42660 445 / 2e-139 Protein of unknown function (DUF616) (.1) Lus10021084 [exp] 44 / 2e-05 AT5G42500 164 / 2e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10039561 [exp] 43 / 3e-05 AT3G13650 157 / 5e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G131500 [exp] 117 / 4e-33 AT5G42655 136 / 3e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.008G061400 [exp] 46 / 2e-06 AT2G21110 223 / 7e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.010G197000 [exp] 41 / 0.0001 AT2G21110 195 / 7e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10032310 pacid=23168529 polypeptide=Lus10032310 locus=Lus10032310.g ID=Lus10032310.BGIv1.0 annot-version=v1.0 ATGCTATGCAGGATCATATTCTGCGTCTCGGTACTCGTTTCAATTATCGTCGTTTTCCTTCTAGCGTTCCTTTCCCCAATCCCTCACCACGCTTACAGCA CCAAGCCCTGGGTCGCTCTCTCATTGTACGTCCAGCAGCCTCAAGTCTCGGTCTCGCCATCCTCCGCCACTGCCGCCGCCGGAGGCGGCGGAGCGTTCGT ATTCCACCGGAAGTTGACTGAAGGTCCGGAGAACACGTCCAGAGTGGTGGGGAAGGCGCAGGGTTTCATAATCCCCTCGGAGACATTTGCCGATTCGGCT TTTAACGTCGTATACCTATCTTTCCGTACGCCGGAGTTCTCGGGGAGCTTGAGCGTCCAGGCGAAAAACGTGGCCGCGGCGGGGGAAAGAGACGAGGGAA GACAGCTGGCGGTGGTTGGGGGAACTGGGTCGTTCGCGTTTGCTCGCGGATTTGCCGTCTTCTTCGCAGGAGACGGCGGTGACAGGGATCGGCCTTATCA GTTGAAGCTTCAGCTAAGATTTCCCAATCGATCCCAAACTATATTTCCTGCGGGTTGA
AA sequence Show only first row Show all	>Lus10032310 pacid=23168529 polypeptide=Lus10032310 locus=Lus10032310.g ID=Lus10032310.BGIv1.0 annot-version=v1.0 MLCRIIFCVSVLVSIIVVFLLAFLSPIPHHAYSTKPWVALSLYVQQPQVSVSPSSATAAAGGGGAFVFHRKLTEGPENTSRVVGKAQGFIIPSETFADSA FNVVYLSFRTPEFSGSLSVQAKNVAAAGERDEGRQLAVVGGTGSFAFARGFAVFFAGDGGDRDRPYQLKLQLRFPNRSQTIFPAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	0	1
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	1.4	0.9814
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	2.4	0.9752
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	3.2	0.9647
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	3.2	0.9708
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	3.9	0.9747
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	4.9	0.9645
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	6.6	0.9740
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	8.5	0.9656
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	8.5	0.9656
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	8.9	0.9611

Compare expression of checked genes

Lus10032310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.