Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42660 539 / 0 Protein of unknown function (DUF616) (.1) AT2G02910 236 / 3e-72 Protein of unknown function (DUF616) (.1) AT1G34550 229 / 5e-67 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G09630 221 / 3e-64 Protein of unknown function (DUF616) (.1) AT1G53040 217 / 4e-64 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT4G38500 206 / 2e-60 Protein of unknown function (DUF616) (.1) AT1G28240 205 / 3e-59 Protein of unknown function (DUF616) (.1) AT5G46220 141 / 7e-37 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016294 [exp] 639 / 0 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1) Lus10032863 [exp] 627 / 0 AT5G42660 594 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024684 [exp] 536 / 2e-171 AT5G42660 445 / 2e-139 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 230 / 1e-69 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 229 / 4e-68 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 218 / 2e-63 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 218 / 3e-63 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 215 / 1e-62 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 209 / 8e-61 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149900 [exp] 566 / 0 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 243 / 1e-74 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 228 / 6e-67 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 222 / 1e-64 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.011G053000 [exp] 219 / 1e-64 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G044100 [exp] 214 / 1e-62 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 211 / 6e-62 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.011G119300 [exp] 209 / 6e-61 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.009G138000 [exp] 207 / 1e-60 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 202 / 8e-59 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10032311 pacid=23168680 polypeptide=Lus10032311 locus=Lus10032311.g ID=Lus10032311.BGIv1.0 annot-version=v1.0 ATGTACGCCAGCAACAGCGTCTCGATTCCTGTCTCCGACGACGACGAATCAGACGAGCTCCTCAGTCGGAAGCGCGCCAGAGTACTGCGGAGGAAGCGCA AGAAGCCGTTCTTCCACAAGCGCTTCGTTAGGTTTCTGGTGAAGTACTGGGCGCTATTGATCTTCGTCCCCGCTATCGTTCTGCTCTGCTACGAGGCTTC CAAACTTGGCCATGAGCGGCCGCCGGCGGAAACTATGGACGACGATGATGATCTCGATTTGTTCGCCGCACATGGTACGGAACTGGATCCGGAGCTCGAT CCAATATTCAAGAAGAAGGTTTCTTCTCATCCCAATTTGAATCAAATGGATCCCACTACCCGAATGGTTGACGGCGTAAGAGAACCTTGCCTGAAGCTCC TACCATCAGATGAACTTGAACTTCTGGATGTTCCCAGTAGTGGTGGAGGTATCGACAGTCCTGTTAAGAATGTTATCTACTTGTCAGAAAAAGATGTTGT ACCGGATTCTTCGGCTACTCGCAGGTCGAAACGAATCAAATTCAATCCATTCACGGGATACCCGAGTCTTGAAGATAGATCCAAAAGCTTTATGGTGAAC CAGGAGGATGCTGCGGCGGTCGTACATTGTGGATTTTTCAGCGAGAGTGCAGGGTTTAAGATAGCTGAAGCGGATAAGAGTTACATGGAGAGTTGCAAAG TGGTAGTTTCCACTTGCGCTTTCGGTGGCGGGGATGATCTTTACCAGCCCATTGGAATGTCAAATGCTTCAGCACATAAGGTTTGCTATGTTGCATTTTG GGATGATATTACTCTGGCTGCTCAGGAGACGGCTGGGCACACAATTGGCAAGGATAAATTTATCGGCAAGTGGCGTATTGTGCTAGTGGAGGATCTGCCC TTTGTGGATCAAAGATTAAATGGTAAAATCCCAAAGATGTTGGGACATCGGCTATTTCCTAATGCGAAATACTCAATATGGGTAGACTCGAAGTCTCAAT TCAGGAGGGATCCTCTGGGAGTTCTCGAAACACTTCTTTGGCGTACCAAATCTGTGTTAGCAATCTCAGAGCACGGAGCTCGCAGCAGTGTGTATGACGA GGCCAAGGCTGTGGTCGATAAACACAAAGCTAGACCAGAAGAGGTCGAGGTGCAAATGACTCAGTATAAGAAAGACGGTATGCCTGAAGACAAAAGATTC AACGGAAAGAAAGCTCTGAATGAAGCTTCGATCATAGTGAGGGAGCACACACCAATCACCAATCTGTTCATGTGCATCTGGTTCAACGAAGCGGTGCGGT TCACTTCAAGAGACCAGCTTAGCTTCCCATACGTGCTATGGCGACTGAAAGTGCTGAAAGATGTCAACATGTTCCCTGTTTGTACACGTAAAGACCTTGT TAATAGTATCGGCCATCTACGCAAGGCCAAACCTTCCATCAAAAGAACCATTTCCAGTACGGTTGATGTTCAGCCTTGA
AA sequence Show only first row Show all	>Lus10032311 pacid=23168680 polypeptide=Lus10032311 locus=Lus10032311.g ID=Lus10032311.BGIv1.0 annot-version=v1.0 MYASNSVSIPVSDDDESDELLSRKRARVLRRKRKKPFFHKRFVRFLVKYWALLIFVPAIVLLCYEASKLGHERPPAETMDDDDDLDLFAAHGTELDPELD PIFKKKVSSHPNLNQMDPTTRMVDGVREPCLKLLPSDELELLDVPSSGGGIDSPVKNVIYLSEKDVVPDSSATRRSKRIKFNPFTGYPSLEDRSKSFMVN QEDAAAVVHCGFFSESAGFKIAEADKSYMESCKVVVSTCAFGGGDDLYQPIGMSNASAHKVCYVAFWDDITLAAQETAGHTIGKDKFIGKWRIVLVEDLP FVDQRLNGKIPKMLGHRLFPNAKYSIWVDSKSQFRRDPLGVLETLLWRTKSVLAISEHGARSSVYDEAKAVVDKHKARPEEVEVQMTQYKKDGMPEDKRF NGKKALNEASIIVREHTPITNLFMCIWFNEAVRFTSRDQLSFPYVLWRLKVLKDVNMFPVCTRKDLVNSIGHLRKAKPSIKRTISSTVDVQP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	0	1
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10030398 [exp]	1.4	0.8765
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	3.2	0.8739
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	4.6	0.8658
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	6.0	0.8627
AT5G56350			Pyruvate kinase family protein...		Lus10010329 [exp]	7.7	0.8637
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10009728 [exp]	10.4	0.8100
AT3G56820			unknown protein		Lus10012105 [exp]	10.6	0.8598
AT5G53750			CBS domain-containing protein ...		Lus10029665 [exp]	12.2	0.8495
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	14.0	0.8150
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	14.1	0.8205

Compare expression of checked genes

Lus10032311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.