Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26140 290 / 2e-92 Cellulase (glycosyl hydrolase family 5) protein (.1) AT1G13130 281 / 3e-88 Cellulase (glycosyl hydrolase family 5) protein (.1) AT3G26130 277 / 6e-87 Cellulase (glycosyl hydrolase family 5) protein (.1) AT5G17500 247 / 1e-75 Glycosyl hydrolase superfamily protein (.1) AT5G16700 226 / 6e-68 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024686 [exp] 890 / 0 AT3G26140 364 / 4e-120 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10006462 [exp] 283 / 6e-89 AT1G13130 601 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10011404 [exp] 280 / 9e-88 AT1G13130 605 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10011403 [exp] 275 / 1e-85 AT1G13130 610 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10006461 [exp] 268 / 4e-83 AT1G13130 612 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10005737 [exp] 93 / 4e-23 AT3G26130 66 / 2e-14 Cellulase (glycosyl hydrolase family 5) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097901 [exp] 382 / 2e-127 AT1G13130 393 / 2e-131 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049700 [exp] 301 / 7e-96 AT1G13130 679 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.008G183400 [exp] 299 / 5e-95 AT1G13130 676 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049800 [exp] 258 / 2e-80 AT1G13130 544 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10032312 pacid=23168623 polypeptide=Lus10032312 locus=Lus10032312.g ID=Lus10032312.BGIv1.0 annot-version=v1.0 ATGCCGCCATATTCCTTCTTCATCTTCTTCATCATCATCTCCACCATCCCTTCATCACACCCTTTACCACTCTCAACCAACAACCGCTGGATCGTCGACT CAACCACCAGCCAACGAGTCAAGCTAGCCTGCGTGAACTGGCCGGGCGCCACCCAAACCATGCTCTCGGAAGGGCTGGACCGACAGCCGCTCCGGTCCAT CGTAACCTCCATCCGGGGGTTAGGGTTCAACTGCGTCCGGCTCACTTACGCCACCTACATGGCTGATATAGTGAGGTATAATCCGTTCCTAGTCGGGATG AGTCACTTGGAGGCGTTCGACGCCGTTTTGGACGAGCTGGGTTTCCAGGGATTGATGGTGGATCTCGACAACCACGTCAGCAAGCCGATGTGGTGCTGTG CCGAGAAAGACGGGAACGGGTTCTTCGGAGATGAGTATTTCGATCCTAAGGAGTGGTTGGTTGGGTTGACCACCCTGGCTCGGCGTTACCTCTACAAGCC CCAGGTACGACGTCAGGCAGGACGAGGACATGTGGATACGTGGAGAAAATACGTAACACTAGCAGGAAATGCGATCCACGTAGTAAATCCTAACGTGCTA ATATTCGCAGGAGGGATAAGCTACGCATCAGTGCTCTCCTTCCTGAAGAACAAGCCTCTAACCACAAACTTCGGCAACAAGTTAGTGTACGAAGCTCACT GGTACCCGTTTACCGCGGGTCCCGAAAAGGCCTGGCTCGAAAGCCCGCTGAACGAGTTGTGTCGAGCCAAGATCGACGGCTATGTCAACAACACCGCTTT CTCTTTCTGCCCTACTGCGGTCAGTGATGCGGAGATCGCGGTAGGGAAGCAGATCAGGAAGCAGGAGGTGGAAGTGCCGTTGTTCGTTGGGGAAGTAGGG ATACCGGGGATGATGGCGAAGAAGTCGAGCGACTACTTCTTGTTGTGCTTCTCGTCGTGGGCGGCGGAGAACGATTTGGATTGGGGTTGGTGGGGGTTGC AAGGAGATTACTATTTCAGGAATAATGTGAGTGGGATGGACGAGTATTTTGGTGTCTTGTCGTATTTTTGGGACAGGACTAGGAATCCATTTTTGATGAA TCGGTTGCGGTTGATGCAGCTGAAGAACCAAGAACCAACATCAACGCTAGGGAAAGCGTACTTGTTATTCCACCCGCAGACAGGAGATTGCATGGTCAAC AACAACATGAAGGAAGTCTACGCCGCCAGCTGCGGCCGACGAAGCAGCCGGTGGCTCTACTCCGGGGACGACTTCCCCATCATGCTGGCCAACAGCAACT ACTGCCTCAAGGCCGGCGGGAACGGGGTTAGGGTTCAGCTGACGACGGAGTGCAACACACCGCAGAGCAAGTGGAGGAGGCTGTCGGCATCCAAGCTTCA TTTGGCGGCCAGAGATGATATTACCGGAGAGTACTTGTGCTTGAAGAGGGACTCCATTTTCACGGCGGATATTTTCACTACACAGTGCGTCTGCTTGGAC GGATGA
AA sequence Show only first row Show all	>Lus10032312 pacid=23168623 polypeptide=Lus10032312 locus=Lus10032312.g ID=Lus10032312.BGIv1.0 annot-version=v1.0 MPPYSFFIFFIIISTIPSSHPLPLSTNNRWIVDSTTSQRVKLACVNWPGATQTMLSEGLDRQPLRSIVTSIRGLGFNCVRLTYATYMADIVRYNPFLVGM SHLEAFDAVLDELGFQGLMVDLDNHVSKPMWCCAEKDGNGFFGDEYFDPKEWLVGLTTLARRYLYKPQVRRQAGRGHVDTWRKYVTLAGNAIHVVNPNVL IFAGGISYASVLSFLKNKPLTTNFGNKLVYEAHWYPFTAGPEKAWLESPLNELCRAKIDGYVNNTAFSFCPTAVSDAEIAVGKQIRKQEVEVPLFVGEVG IPGMMAKKSSDYFLLCFSSWAAENDLDWGWWGLQGDYYFRNNVSGMDEYFGVLSYFWDRTRNPFLMNRLRLMQLKNQEPTSTLGKAYLLFHPQTGDCMVN NNMKEVYAASCGRRSSRWLYSGDDFPIMLANSNYCLKAGGNGVRVQLTTECNTPQSKWRRLSASKLHLAARDDITGEYLCLKRDSIFTADIFTTQCVCLD G

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26140			Cellulase (glycosyl hydrolase ...		Lus10032312 [exp]	0	1
					Lus10002009 [exp]	3.3	1.0000
					Lus10025056 [exp]	4.6	1.0000
					Lus10010663 [exp]	4.7	1.0000
					Lus10014229 [exp]	7.4	1.0000
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	8.1	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10031602 [exp]	8.8	1.0000
AT5G64820			unknown protein		Lus10025572 [exp]	9.4	1.0000
AT2G21720			Plant protein of unknown funct...		Lus10007431 [exp]	9.4	1.0000
					Lus10033171 [exp]	9.4	1.0000
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006721 [exp]	10.5	1.0000

Compare expression of checked genes

Lus10032312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.