Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23630 293 / 7e-100 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT1G64090 288 / 1e-97 RTNLB3 Reticulan like protein B3 (.1.2) AT4G11220 283 / 8e-96 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT2G46170 278 / 4e-94 Reticulon family protein (.1.2) AT5G41600 276 / 2e-93 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT3G61560 263 / 2e-88 Reticulon family protein (.1.2) AT3G10260 197 / 3e-62 Reticulon family protein (.1.2.3) AT4G01230 188 / 5e-59 Reticulon family protein (.1) AT3G18260 146 / 8e-43 Reticulon family protein (.1) AT2G15280 111 / 8e-30 Reticulon family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024687 [exp] 361 / 6e-127 AT1G64090 227 / 2e-74 Reticulan like protein B3 (.1.2) Lus10028753 [exp] 314 / 2e-100 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10017533 [exp] 289 / 3e-98 AT1G64090 303 / 9e-104 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 285 / 5e-97 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10027548 [exp] 284 / 2e-96 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10038833 [exp] 277 / 1e-93 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10014948 [exp] 276 / 4e-93 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10039307 [exp] 272 / 1e-91 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2) Lus10041080 [exp] 270 / 1e-90 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097700 [exp] 317 / 2e-109 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 293 / 4e-100 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 289 / 2e-98 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 287 / 7e-98 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.015G027300 [exp] 282 / 9e-96 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.002G165400 [exp] 266 / 1e-89 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.002G055600 [exp] 206 / 6e-66 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 196 / 6e-62 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.013G160900 [exp] 192 / 2e-60 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.012G054100 [exp] 138 / 6e-40 AT3G18260 238 / 6e-80 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10032313 pacid=23168526 polypeptide=Lus10032313 locus=Lus10032313.g ID=Lus10032313.BGIv1.0 annot-version=v1.0 ATGACTGAGCATCACGAGAAGAAGGAGGACTCGGTGGCGGAGTCTCTGATGGACAAGATATCGGAGAAGATCCACGGCGGCGGCGATGATTCGTCTTCCG ACACCGTCCACTACGACAATACGAAGAAGTCGGCGCCGGATTCTCCGTCGTCGATGAAGTCTAAAATCTACCGCCTCTTCGGCCCCGAGCAGCCGGTTCC CCAGGTTCTTTGCGGGGGGGCGGTGGTGGAAAACTTTGAGCTCGAAATCGAAGGGCTCGTTCTTGCGATTGCTTTTAGTGCTGCGGATGTTTTCCTGTGG AGGAACAAGAAGATTTCGACTGGAGTTCTTGGTGGTGCAACTGCAGCATGGGTACTATTTGAATTACTCGAGTACCACCTTCTCACGCTGGTTTGCCATG CTCTGATTCTTGCACTGGCGGTTCTGTTTCTGTGGTCCAATGCCTGCACCTTCATCAACAAGTCCCCACCACGCATTCCAGAGGTTCAAATCCCAGAGGA CCCTTTTCTACAACTTGCTTCTGCGCTTAGGATTGAGATCAATCGGGGCTTGGTTTCTCTTCGTGATATTGCATCCGGAAGGGAGCTGAAGAAGTTCCTT GTGGTTATTGTTGGTTTGTGGTTCTTGTCTATCGTAGGAAGCTGGTGCAACTTCTTGACTCTGTTCTATATAGTTTTTGTGCTGCTCCACACTGTGCCAG TGATCTACGAGAAGTACGAAGACAAGGTCGACGCCTTCGGAGAGAAGGCATGGGTCGAGATCAAGAAACAGTATGCAGTGTTCGACGAGAAGGTGCTAAG TAAGATCCCAAAAGGCTCGCTGAAGGCCAAGAAGAAGGATTAA
AA sequence Show only first row Show all	>Lus10032313 pacid=23168526 polypeptide=Lus10032313 locus=Lus10032313.g ID=Lus10032313.BGIv1.0 annot-version=v1.0 MTEHHEKKEDSVAESLMDKISEKIHGGGDDSSSDTVHYDNTKKSAPDSPSSMKSKIYRLFGPEQPVPQVLCGGAVVENFELEIEGLVLAIAFSAADVFLW RNKKISTGVLGGATAAWVLFELLEYHLLTLVCHALILALAVLFLWSNACTFINKSPPRIPEVQIPEDPFLQLASALRIEINRGLVSLRDIASGRELKKFL VVIVGLWFLSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDKVDAFGEKAWVEIKKQYAVFDEKVLSKIPKGSLKAKKKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	0	1
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	1.7	0.8795
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	2.4	0.8752
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	4.2	0.8663
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	6.3	0.8545
AT3G11640			unknown protein		Lus10000027 [exp]	6.8	0.8049
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	7.7	0.8233
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	7.9	0.8378
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	8.1	0.8533
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10039876 [exp]	8.4	0.8286
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	10.1	0.8527

Compare expression of checked genes

Lus10032313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.