Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028722 [exp] 89 / 2e-19 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10037151 [exp] 56 / 8e-09 AT5G02700 60 / 2e-10 F-box/RNI-like superfamily protein (.1) Lus10024691 [exp] 54 / 2e-08 ND / Lus10004525 [exp] 52 / 3e-07 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10005091 [exp] 48 / 6e-06 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10037149 [exp] 41 / 0.0003 ND 40 / 3e-04 Lus10003089 [exp] 41 / 0.0005 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10011971 [exp] 42 / 0.0007 AT1G61320 103 / 2e-23 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10024688 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032314 pacid=23168661 polypeptide=Lus10032314 locus=Lus10032314.g ID=Lus10032314.BGIv1.0 annot-version=v1.0 ATGAAGAAGCACATTAAGTGGGTTGATCAGGTATTGGCTCAACACAAAGGTCCTAAAGTAAACAGCTTCCTAGTCTACTTATACTCAACCCATGGATCAA ACTCGCATCGTGAGTTTAACAGGTGGCTCAAGTTTGCAAGCACAAAGGGAGTCGAAAGCCTTGAGTTGGTCCACTCTTGTACAGCATCAGCGCTACCAAT TATTTCAAGAAACTGTTTCAGTAACATGAAAAGTCGTTCAGGTTTGTCGAACATTCGGTTCCTTCGAGCCTTGTGTTTGAGACATGTCCGTGGCACCGAT AAGATGTTCCGTAGTCTGGTCGCTGATTATCATCTACTTGAGAAGTTAGTCATAGATTCGTCTAAGGGCTTAGTTAAGGTTAATGTGTCTTCTTTGGAGT CATCCTCCCCGCCATTGAAATTGAAGCACTTGGAGATATTCAACTGTATTTATGTGTTGGTGATTAAATTCCGTGCGCCAAATCTCGCAAGCTTCCGTTA TGATGGCGATGTAGTTGATCTTCAGTTTGACAATGTCTCAAGCCTAAAGGAGAGGGATTTGACGTTTGGTTTTCAAACTCCATGCCATTCTGATCTGCAG TCTCTTGGATCAATTCGTGAGATAAAACATCTCAAACAGCTGATTATGTATCTTGAATGTGATTATTTGGACGATCGATATCGTAGACTGGTTCCCCTCA TAAATGCTTGTCCATCCTTGTATCGATTGTCACTGACGCTAGCGGAGGATGACAATGTGGAGCCCTTCAATGACGATGGTTCGTTTCTTGGAGTATGTTC TCCGACACTTCACCATGCTCGAGAAACTAATATTCGACAGTCGCAGCAAGCCTGTCGATATGTGCATTTCCCACTGGAGATCTATGTTCCCTTCAACGGT TGA
AA sequence Show only first row Show all	>Lus10032314 pacid=23168661 polypeptide=Lus10032314 locus=Lus10032314.g ID=Lus10032314.BGIv1.0 annot-version=v1.0 MKKHIKWVDQVLAQHKGPKVNSFLVYLYSTHGSNSHREFNRWLKFASTKGVESLELVHSCTASALPIISRNCFSNMKSRSGLSNIRFLRALCLRHVRGTD KMFRSLVADYHLLEKLVIDSSKGLVKVNVSSLESSSPPLKLKHLEIFNCIYVLVIKFRAPNLASFRYDGDVVDLQFDNVSSLKERDLTFGFQTPCHSDLQ SLGSIREIKHLKQLIMYLECDYLDDRYRRLVPLINACPSLYRLSLTLAEDDNVEPFNDDGSFLGVCSPTLHHARETNIRQSQQACRYVHFPLEIYVPFNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032314 [exp]	0	1
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	4.4	0.9354
AT4G35620		CYCB2;2	Cyclin B2;2 (.1)		Lus10041092 [exp]	5.3	0.7445
					Lus10032828 [exp]	6.2	0.9354
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	6.3	0.8809
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10033306 [exp]	7.5	0.9354
AT2G25940		ALPHAVPE, ALPHA...	alpha-vacuolar processing enzy...		Lus10033344 [exp]	8.7	0.9354
					Lus10000273 [exp]	9.7	0.9354
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	10.0	0.7731
					Lus10021684 [exp]	10.4	0.7456
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	10.7	0.9354

Compare expression of checked genes

Lus10032314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.