Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 79 / 1e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 73 / 6e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 72 / 7e-14 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024689 [exp] 527 / 1e-180 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 439 / 4e-145 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10021906 [exp] 253 / 2e-78 ND / Lus10019871 [exp] 206 / 2e-58 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 196 / 7e-55 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 191 / 6e-53 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 189 / 3e-52 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 175 / 4e-47 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 137 / 1e-34 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140700 [exp] 279 / 8e-86 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 255 / 2e-76 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 186 / 6e-51 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 179 / 9e-49 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 179 / 1e-48 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 178 / 2e-48 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 97 / 7e-22 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 94 / 4e-21 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 81 / 4e-17 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 75 / 9e-15 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10032315 pacid=23168647 polypeptide=Lus10032315 locus=Lus10032315.g ID=Lus10032315.BGIv1.0 annot-version=v1.0 ATGGATTTGTTTGATAGGATCGTGAAATATGCTGCCTCTCGTGGTGTTCAACACATATGCTTGCGTGGTTATTATAGGCCTTATATTGAGATAGCCATTT CAGGTATGATCTGCAGTTGCTATCGATCTCTTAAGGCTCTGGAATTAGAAAGCCTACGTTTAGACGATACAGTGGTTGTTGGATTGTTTTCTGGTTTACA ACAACTTGAATCTCTTACTTTGAGCAACTACAAGTTCAACTTCAACGCGTTCGATAGTGATCATGATGGTCTTGATAATCTTTCCAAATTGAAAAACCTA AAGCTGATACGTTGCCATCCTATCAATAATTGTTCACCTAGTATTCTTAAAGTTCATGCAGCCAAACTTCTATACTTGGAGATACGTCAGACATGGTATG ACAGTACTGAAATTGTCACACCTAAGCTCCAATCTTTGCGTATTGAGTTTCGGTCTTTGCATCTGTGTGCTACCAGACTTCTCCAAGTCAAATCTTCCCT CGATCATGCAGACATTGACTTATTGTATATGAGGCTTCTGTTTTGTGAGACCTCTAGTGACAATGATTCCGAGGAGAAACTGCTGCTGCTCAAGCAGTGC ATAAGCTTGTTCAATGTATTGGCTAATGTACAGTCTCTCAATTTGCGAATTCGACCCTTACAGGTATGTTACCAGTGGTTGATCCAGACTTGTGACATCG AATCTCGGCTCGTGGATCTTAGAACGTACCACATCAACTCCTTCGTTATTTTCTCGGAGGATCTCGTAAGGAAGATAAGCAATCTACGGTTGAGAAGTGA TCGCAATGGTCTCTTAGCCTTAGTGTGCCACCGCCGTCCGCCGCCACCTGTTTGTCACTCACTCCCTCCAAATCATTGTTTTGAAAAATTCCACCAATCC TTCCCTCCACCGCCAAATTCCAAACTTCTTACCGCCAAAAAAGCTCTATACGAAAGTAAAGCTTGGAGCTTTTCTCTACCGTTGTTCTGTTTCTGCCGCA GGATATCCAAGAAGGGGGGAAGACACGTCACGAATGGTGAAGAGCAACGATGCTTTCTCCTTCCAAAAGCAGCTGTATACTATCTTTATCCAAAGAAATC CTTCTTAGGGGTTTGGCCGTTTGGGAGAATGTGGGGAAAGGCGATTTTTGATTTGATAATTCTAACTCTGGGTAGCTTTGTAACAATTGATTTGAAGGGA AGTGGTTCTCCAATAATCACAAGTTGTCCCTTACCCTTTGTGCAGATCCACAATGTGAGGCAAAGTCCTCGCCTTCTGCAAACGGGCAGCATTAAGCAAG AACTCGATTCTGGAGACGCAACTCCCAACATCATTGGCAAGGAGAAGGATGATTTGTCCACTGATACTGATATGTTGGTTTCTCCTCTTCTTCGAAATCA GATGCGTCTTGAGAAAGGGTTTGGGGCCAAGCATTTGCCTGATGAGGACACAATGATCGACTTGGAAGATGAGGATGGCAATATTCTTTCCGCGAGATAT CTAGTTCGTAAACAAGGACTTAGTGGTGGATGGAAAGCCTTTGCCACGGATCACAAGTTAGTAGCAGGAGATGCTCTGGTGCTTCAGTTAGTTGAGCCAA CCAAGTTCAAGATCTACATTGTTAGGGGAAGAAGCTCAGATAAAATGGATGTTGATTCTGGCCTTCTGCAAATGGACAGTGATAAGAAAAAACTGAAATC TGGTTTATGGTTTCTAGTTCATGCAGAGAATCTCTCCAAAGGTTACAAAAGAAGTAACTTGGGAACTAATCATCTGCTGACTAACAACAACTCCGAACGG CACGAGTCTAACGATGGACCAGAAGGCAGTTTCAGGTTCAGCATCTCAGATGGCATACGGATGTGTGAATCTACCACTATCGATTTCAAGCAAGTGAAAA GCTTTGACGACTTTGACATTGTGGTCAACGGCTTAGTGATAAACTGCGAGCTCTCCAGACACCTTCAGCTCAAGTACTATCAACTATGCAACAGCCAGAA GTTGTTTCTCCACCAACACCTTCTCAGCGGACTCAACTGTAAGCTGATCGTCGGAGTCATCGCAGAGACCATAAGCATTGCTGACGAAATCAGAGCTTCA GATTTTACACAACAGAAGAAGGACGAATTCGCTACATGGGAGAACACTTTGGTAGCGTTTGAGAAGTTGGGAATGAATGTTGAGTTCATACTCGCCAGGT TGAGGCAGCTCATGGGTCTTTGTGACGATGCGAACCGGCGCAAGAGACTGAGAACTGAGAGGATCCGAGTAGAAGAGGAGGTGAAGGTTTTGAAGGCGAA ACTTGAGGAATCGGTCGAAAGGATCAAAAGAATAGATGGAGAAATGGAAGTAGATCATGAGGTGAAGTTCAGAGAATTGGCTAAAGCTCCATGGTCACTG TGA
AA sequence Show only first row Show all	>Lus10032315 pacid=23168647 polypeptide=Lus10032315 locus=Lus10032315.g ID=Lus10032315.BGIv1.0 annot-version=v1.0 MDLFDRIVKYAASRGVQHICLRGYYRPYIEIAISGMICSCYRSLKALELESLRLDDTVVVGLFSGLQQLESLTLSNYKFNFNAFDSDHDGLDNLSKLKNL KLIRCHPINNCSPSILKVHAAKLLYLEIRQTWYDSTEIVTPKLQSLRIEFRSLHLCATRLLQVKSSLDHADIDLLYMRLLFCETSSDNDSEEKLLLLKQC ISLFNVLANVQSLNLRIRPLQVCYQWLIQTCDIESRLVDLRTYHINSFVIFSEDLVRKISNLRLRSDRNGLLALVCHRRPPPPVCHSLPPNHCFEKFHQS FPPPPNSKLLTAKKALYESKAWSFSLPLFCFCRRISKKGGRHVTNGEEQRCFLLPKAAVYYLYPKKSFLGVWPFGRMWGKAIFDLIILTLGSFVTIDLKG SGSPIITSCPLPFVQIHNVRQSPRLLQTGSIKQELDSGDATPNIIGKEKDDLSTDTDMLVSPLLRNQMRLEKGFGAKHLPDEDTMIDLEDEDGNILSARY LVRKQGLSGGWKAFATDHKLVAGDALVLQLVEPTKFKIYIVRGRSSDKMDVDSGLLQMDSDKKKLKSGLWFLVHAENLSKGYKRSNLGTNHLLTNNNSER HESNDGPEGSFRFSISDGIRMCESTTIDFKQVKSFDDFDIVVNGLVINCELSRHLQLKYYQLCNSQKLFLHQHLLSGLNCKLIVGVIAETISIADEIRAS DFTQQKKDEFATWENTLVAFEKLGMNVEFILARLRQLMGLCDDANRRKRLRTERIRVEEEVKVLKAKLEESVERIKRIDGEMEVDHEVKFRELAKAPWSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	0	1
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	1.7	0.8786
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	3.2	0.8371
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10006483 [exp]	5.7	0.8339
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10008577 [exp]	6.9	0.8104
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030832 [exp]	9.1	0.8679
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10035209 [exp]	12.0	0.8500
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10023396 [exp]	17.2	0.8070
AT4G35150			O-methyltransferase family pro...		Lus10025440 [exp]	17.9	0.8037
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10002846 [exp]	18.4	0.8215
AT4G39630			unknown protein		Lus10035849 [exp]	23.0	0.8042

Compare expression of checked genes

Lus10032315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.