Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29660 277 / 5e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 269 / 8e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 268 / 4e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 260 / 2e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 257 / 4e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19010 250 / 1e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 248 / 2e-79 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 243 / 7e-78 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71691 244 / 1e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19050 241 / 5e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024690 [exp] 601 / 0 AT1G29670 232 / 7e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011999 [exp] 289 / 2e-95 AT5G45670 328 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 288 / 3e-95 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 288 / 6e-95 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002774 [exp] 286 / 2e-94 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015241 [exp] 277 / 1e-90 AT5G45670 315 / 1e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005414 [exp] 276 / 3e-90 AT5G45670 315 / 2e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 276 / 3e-90 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015842 [exp] 274 / 1e-89 AT5G45670 325 / 7e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076400 [exp] 321 / 4e-108 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G008100 [exp] 302 / 8e-101 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 294 / 2e-97 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 290 / 3e-96 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 287 / 1e-94 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 286 / 2e-94 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 285 / 8e-94 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 283 / 3e-93 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 283 / 4e-93 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 282 / 5e-93 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10032316 pacid=23168639 polypeptide=Lus10032316 locus=Lus10032316.g ID=Lus10032316.BGIv1.0 annot-version=v1.0 ATGGCTTCACGGTGGTCCTCCGCCGTCTGGACAGCGGCTTCCCTGTTATCATTCGTCTTCTCCGTCGCCAACGCCAAACCGTTTCCTTGCTATTTCATAT TCGGCGACTCTTTAGCCGATAATGGGAACAACAACATGCTCAACACCGATGCTAGAGCCAATTACCCGCCATATGGGGTCGATTTCCCTGCCGGTCCAAC CGGACGGTTCACCAATCGCCGGACCATTGTCGATTTCTTTGCCGAGTACTTGGGCTTCAGTCAATACATCCCACCATATGCAACGGCCGTAACCGAGAAC ATTGTAACGCCACCGGATTTTCTGTCCGGTGTGAACTACGCTTCCGGTGTCGCCGGCATCCTCGAAGAAACCGGCCAAGCAATGGGGGATCGAATACCGT TGGGGCAACAATTAGAGAACCACGAAATCACCATGCGCCGGATCTTGGAGCGCATGGGAGACGTGGTAGGCACTTCGAACCACCTGAGGCAGTGCTTGTA CACTTTAGGGTTCGGCAGTAATGACTTCCTTAACAATTACTTCCGTCCCAATTGTCCCTCCAGCAAACTTTACACCGTCGATCAATTTTCTCAAATCTTG GTTCAACGCTACGTATTGGGGCTTTTGAAATTATACGCATACGGAGCGAGGAAAATTGCGGTGTTTCCGGTGGGGCAGATCGGATGCATCCCATTCGCGA TCCAGACGTTCGGAACAAACGGATCCGCCACAGGTTGTGCCGAGAAGTTAAACGACGCCGCCAACATCTTCAACGGCCATCTGAAGTCCGCGATTAATAA GCTGAATCTGATGCTATTCGGTGCCCAGTTGATCTACATCGGACCCGGATCCGACGCCCTCTTGACCACCCGCCTTAACCATTCCAGCAGCAATTCTTAT TTAGGGAATGTGGATTCGCCGTGCTGCGTGGTGGAGCCAAGGACCGGACAGTGCGTCCCGAATGAAGCTCCGTGTCCCGACCGAACAGAGTATGTTTTCT GGGATTGGTTCCATCCCACCGACGCTTTCAACTCGTTTACCGCCGAGACTGCGTTTCAGTCGTTGCGACCACTCCTCGGTGCTTCTGCTTCATATGCCGC CGCCGCCGCCGATATGTAA
AA sequence Show only first row Show all	>Lus10032316 pacid=23168639 polypeptide=Lus10032316 locus=Lus10032316.g ID=Lus10032316.BGIv1.0 annot-version=v1.0 MASRWSSAVWTAASLLSFVFSVANAKPFPCYFIFGDSLADNGNNNMLNTDARANYPPYGVDFPAGPTGRFTNRRTIVDFFAEYLGFSQYIPPYATAVTEN IVTPPDFLSGVNYASGVAGILEETGQAMGDRIPLGQQLENHEITMRRILERMGDVVGTSNHLRQCLYTLGFGSNDFLNNYFRPNCPSSKLYTVDQFSQIL VQRYVLGLLKLYAYGARKIAVFPVGQIGCIPFAIQTFGTNGSATGCAEKLNDAANIFNGHLKSAINKLNLMLFGAQLIYIGPGSDALLTTRLNHSSSNSY LGNVDSPCCVVEPRTGQCVPNEAPCPDRTEYVFWDWFHPTDAFNSFTAETAFQSLRPLLGASASYAAAAADM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	0	1
					Lus10015658 [exp]	1.0	0.9436
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	2.6	0.9006
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	3.7	0.8814
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	3.7	0.9184
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	4.2	0.8981
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10012444 [exp]	4.4	0.8520
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	4.6	0.9158
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	4.9	0.9104
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	5.0	0.9098
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	5.7	0.8717

Compare expression of checked genes

Lus10032316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.