Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026190 [exp] 82 / 4e-18 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10032432 [exp] 75 / 9e-16 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10014678 [exp] 71 / 1e-15 ND / Lus10023042 [exp] 67 / 4e-13 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10002239 [exp] 66 / 9e-13 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 65 / 3e-12 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 63 / 1e-11 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008502 [exp] 62 / 2e-11 AT5G44980 69 / 9e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 62 / 3e-11 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032317 pacid=23168462 polypeptide=Lus10032317 locus=Lus10032317.g ID=Lus10032317.BGIv1.0 annot-version=v1.0 ATGAAAAACCGGGTCGTTGACTTAAATAGTCCCGACTGTTATTCTTTAACCGAAGGTCAGTTCTTCATCGGAAGATCGCCGTTCTTCGCAGTGTTCTGCT TCATTGATGAGATACCCCAGTGGAAGCCGAGATATAAGGACATGCTTGGCAGGGTCATTAAATATGCCTCCTCTCATGGTACTCAACATTTCGTCCTTTG TTTCCAAAGACGTTCTACTTTCTCAGATGCATTTGGCTCCACTCTGAGATTCAATTTTGAAACTCTAGAATTAGGCGGGATGGACATCCCTAGTGGATTT GGATCTTTGAGTTTCCAGATGCTTACCACTTTGAATCTGGAGCGGTGCCAACTCTATAATGATGAAGAAAGGGTCTTCGATCTTATTTCAAACTTCCCCT CTCTGACGAATTTGGTCATATCTCGTTGCAACTGGTGTCATCAATCCTTGAGTTTGAAGGATTATTCTACCAAGATAATAGGACCACAATTGCGTAGCTT GAAGTTGGATATGATAAGTAATACTGAAATAGTTGCAGGTACTGGAGCATATCTCTACGTATGTGGAACGGAATCAGTCTTCTTTAACGAGATTGAAGTC TTTCGAGTGTGA
AA sequence Show only first row Show all	>Lus10032317 pacid=23168462 polypeptide=Lus10032317 locus=Lus10032317.g ID=Lus10032317.BGIv1.0 annot-version=v1.0 MKNRVVDLNSPDCYSLTEGQFFIGRSPFFAVFCFIDEIPQWKPRYKDMLGRVIKYASSHGTQHFVLCFQRRSTFSDAFGSTLRFNFETLELGGMDIPSGF GSLSFQMLTTLNLERCQLYNDEERVFDLISNFPSLTNLVISRCNWCHQSLSLKDYSTKIIGPQLRSLKLDMISNTEIVAGTGAYLYVCGTESVFFNEIEV FRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032317 [exp]	0	1
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10008908 [exp]	1.7	0.8387
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	13.3	0.8005
AT1G77122			Uncharacterised protein family...		Lus10028624 [exp]	18.7	0.7241
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	20.9	0.8352
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	21.8	0.8209
AT3G05350			Metallopeptidase M24 family pr...		Lus10004479 [exp]	23.4	0.7900
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	24.6	0.8046
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	26.1	0.8011
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	27.0	0.8178
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10006727 [exp]	27.5	0.8286

Compare expression of checked genes

Lus10032317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.