Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34360 140 / 2e-36 translation initiation factor 3 (IF-3) family protein (.1) AT4G30690 42 / 0.0006 Translation initiation factor 3 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024699 [exp] 502 / 1e-177 AT1G34360 122 / 3e-30 translation initiation factor 3 (IF-3) family protein (.1) Lus10018394 [exp] 43 / 0.0004 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007619 [exp] 43 / 0.0004 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036595 [exp] 42 / 0.0004 AT2G24060 268 / 4e-89 Translation initiation factor 3 protein (.1) Lus10035814 [exp] 42 / 0.0005 AT2G24060 268 / 4e-89 Translation initiation factor 3 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137000 [exp] 159 / 3e-43 AT1G34360 182 / 8e-51 translation initiation factor 3 (IF-3) family protein (.1) Potri.018G104000 [exp] 45 / 4e-05 AT2G24060 278 / 2e-93 Translation initiation factor 3 protein (.1) Potri.006G182000 [exp] 42 / 0.0005 AT2G24060 251 / 3e-83 Translation initiation factor 3 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05198 [flax] [poplar] IF3_N Translation initiation factor IF-3, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032318 pacid=23168687 polypeptide=Lus10032318 locus=Lus10032318.g ID=Lus10032318.BGIv1.0 annot-version=v1.0 ATGGCTTACTGGAGCAGACTCGCTCAATCTCAGCTGACCCATCAATGGCGGAGACGTTGTTTCCATACTTCTTCTTATGCTTTTTCCTCCATTCTTTACA CTGCTAACAACTCCTCCAGTGCGTTTGCTTGGGGAGACCGTTTATCGGGAACTACAGTAAAACCCGACGAATTCGCCTACAATGGTAGATTGTTCTTCGC TCGTAGCTATTCCCAGGGTTCGGAAAGAAAGGAAGAGCCACGTCTTAATGGGAAAATCACTGGTCATATTGTTAGGCTCGTCACTGACTCAGTGTGGACT GATCTGTGCAATGTACTTCCCGCAGAACACAAAATTGTTTCACTAAGGGAAGCTTTAGAACAAGCCAAGAGAATGAATCTTGATTTGGTTGAGGTTCAAA GGAATGCTGATCCACCGGTGTGTAAAATCATGGACTATCATAAGCAGAAATACGTTCGAGAGCAAACTTTTAAAGAGCGTGTTAAAAATAAGGAACTGAA AGATTTGAAAATGAAAGCAGATTCTGTGAAAAGATTGATGGATCGTGGTTACCGAGTGAAGTGTGTGGCCCTGCCTTCATCGAAAAAGTACGAGGGTCAG GAGGATTTGGGAGCAGTATTATCCTCTATCATGGATTTGCTCGTAGACGTAGCTATTGTGGAAAGTGGACCTTTGGTGGAGAGGAAACTAGCATATGCTA TAGTTAGACATGTCAAATTTGGCCCATCAAAGAAAGGTACGAAAAAGGTAAAGGATGCCACCTATTCACGGCCGACTGGAAACTCTGGGGTGTCCGGAGA AGGTGCAGCTGAAACCGACACTGAAGCTGAAGATGGAGCCCTTTCTGATGAGGATGACGGTCTTGATGAAATTTCTGTTCATCCAGCTGCCCCAGCGGGC AGAGCTCCCTACAGCTCGGCCTCAAGTGCCCCCAAGTACTCTGAGGCCAACAGACAAAGGCATGGTTCAGATAGGATTGCACCGTCTATGCCAGAGCCTC CTCTACCTTCAGAAAATAGGTACAAAAAGCCTGGACCAGCGAACAACAACCATTTCAGACCTCCATTCGCAGATAACAGGAGACCTCCTCAAGAAGGAGG TTCATTCAGGCCTCAACGGCAGTTCCCAAGTGACCGGAATCAGCAACAACGCTCTGACTTGAACATTCCTCCAGGAGTTAGGAGGCCAGTCCCTCCTAGT CCAGGCACAAAAACGCCTAGCTTTGGTATATTAAGCTCTCCGAAGCCAGGTGGACCATCAGAAGATAACACCGACAGTAGTAACAATGTAGGGAATCGCT ATGGCACTGGCCGCAGATTTTAG
AA sequence Show only first row Show all	>Lus10032318 pacid=23168687 polypeptide=Lus10032318 locus=Lus10032318.g ID=Lus10032318.BGIv1.0 annot-version=v1.0 MAYWSRLAQSQLTHQWRRRCFHTSSYAFSSILYTANNSSSAFAWGDRLSGTTVKPDEFAYNGRLFFARSYSQGSERKEEPRLNGKITGHIVRLVTDSVWT DLCNVLPAEHKIVSLREALEQAKRMNLDLVEVQRNADPPVCKIMDYHKQKYVREQTFKERVKNKELKDLKMKADSVKRLMDRGYRVKCVALPSSKKYEGQ EDLGAVLSSIMDLLVDVAIVESGPLVERKLAYAIVRHVKFGPSKKGTKKVKDATYSRPTGNSGVSGEGAAETDTEAEDGALSDEDDGLDEISVHPAAPAG RAPYSSASSAPKYSEANRQRHGSDRIAPSMPEPPLPSENRYKKPGPANNNHFRPPFADNRRPPQEGGSFRPQRQFPSDRNQQQRSDLNIPPGVRRPVPPS PGTKTPSFGILSSPKPGGPSEDNTDSSNNVGNRYGTGRRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34360			translation initiation factor ...		Lus10032318 [exp]	0	1
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10042754 [exp]	2.6	0.8644
AT5G43100			Eukaryotic aspartyl protease f...		Lus10019309 [exp]	4.2	0.8642
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10036232 [exp]	13.1	0.8597
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	13.6	0.8643
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10023105 [exp]	15.0	0.8105
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	17.0	0.8460
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10029910 [exp]	17.9	0.8585
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	26.5	0.8414
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10041141 [exp]	27.1	0.7530
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	29.7	0.8282

Compare expression of checked genes

Lus10032318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.