Plant FIBer expression Database

Lus10032319 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55205 52 / 4e-09 unknown protein
AT3G13674 50 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024700
[exp]
148 / 5e-46 AT1G55205 80 / 4e-20 unknown protein
Lus10023655
[exp]
109 / 2e-31 AT1G55205 83 / 3e-22 unknown protein
Lus10013008
[exp]
40 / 0.0001 AT1G70350 59 / 3e-12 unknown protein
Lus10029157
[exp]
40 / 0.0002 AT1G70350 59 / 2e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G082800
[exp]
71 / 3e-16 AT3G13674 / unknown protein
PFAM info
Representative CDS sequence
>Lus10032319 pacid=23168580 polypeptide=Lus10032319 locus=Lus10032319.g ID=Lus10032319.BGIv1.0 annot-version=v1.0
ATGGCGTCCACGAAAGCTATCTCTCGGTTATCGTCTCGATTACAGCCCTTCGCTTTCAAACTCAACAAAGGGTCACTCGCTCCACAGTTCCCCTCGTTGA
ACTCTTGCCTTCCGCCGTCTCGAGGCAATGCCTCTGCTGCAAACCTCTCTCGCCTGTCCAGATTACCGGTGGAACTGAGCTGCGTGGTATCGATGTTGCC
GCTGCATAGTGCGATTGCTTCAGCAAGGTTAATATCGAGCTTGTCCGTTGACTCGCAGACTTGGACGTTAGTCCCTCAAGATATGATGGTTCTCGTATTA
GATAATGAAACTGAAGTCAACCACGAAATTTGGATCTCCCCAGGAAAGAGTTCTTACTTTCCTCATTCAGTTCTAGCTATTTTCGTGATGAATTTGATCT
TTGTTAGCAGCAGCATTTCGTTCAGCCAGCTAGCCTACCTTTCTCCTCAGTTAAGGGACACACATCTTGTGATCTTGTCTTTTGATAGGCCAAACCTACA
CCCTCTTGGAAAACAGGATGCAGACTCTTAG
AA sequence
>Lus10032319 pacid=23168580 polypeptide=Lus10032319 locus=Lus10032319.g ID=Lus10032319.BGIv1.0 annot-version=v1.0
MASTKAISRLSSRLQPFAFKLNKGSLAPQFPSLNSCLPPSRGNASAANLSRLSRLPVELSCVVSMLPLHSAIASARLISSLSVDSQTWTLVPQDMMVLVL
DNETEVNHEIWISPGKSSYFPHSVLAIFVMNLIFVSSSISFSQLAYLSPQLRDTHLVILSFDRPNLHPLGKQDADS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G55205 unknown protein Lus10032319
[exp]
0 1
AT1G18850 unknown protein Lus10023616
[exp]
1.0 0.8662
AT1G55205 unknown protein Lus10024700
[exp]
2.4 0.8556
AT3G26750 unknown protein Lus10021459
[exp]
3.2 0.8063
AT2G36620 RPL24A ribosomal protein L24 (.1) Lus10032198
[exp]
5.7 0.8147
AT4G18100 Ribosomal protein L32e (.1) Lus10012195
[exp]
12.7 0.7989
AT3G52570 alpha/beta-Hydrolases superfam... Lus10021315
[exp]
13.7 0.8074
AT1G55040 zinc finger (Ran-binding) fami... Lus10031502
[exp]
14.5 0.7237
AT1G44835 YbaK/aminoacyl-tRNA synthetase... Lus10025613
[exp]
17.0 0.7453
AT1G26880 Ribosomal protein L34e superfa... Lus10036750
[exp]
18.7 0.7938
AT1G41880 Ribosomal protein L35Ae family... Lus10040235
[exp]
22.1 0.7819

Lus10032319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.