Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09620 851 / 0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT4G04350 47 / 4e-05 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT4G10320 46 / 8e-05 tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G14610 42 / 0.001 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024704 [exp] 1088 / 0 AT1G09620 1696 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10025653 [exp] 72 / 3e-13 AT1G09620 566 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10015552 [exp] 48 / 2e-05 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 43 / 0.0009 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226700 [exp] 910 / 0 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.003G003900 [exp] 899 / 0 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.007G126501 [exp] 47 / 4e-05 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.017G033200 [exp] 47 / 6e-05 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.011G009600 [exp] 46 / 8e-05 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V)
Representative CDS sequence Show only first row Show all	>Lus10032320 pacid=23168489 polypeptide=Lus10032320 locus=Lus10032320.g ID=Lus10032320.BGIv1.0 annot-version=v1.0 ATGGCTGAGGAGAGTGGGAGAAAATTGACGAGAAGGGACAGTCTTTTGGAAATTGAGGCAAATGCTAGAAAATGGTGGGACGAGAAAGATGTTTTCAGAG CTGAGCCCGGTGAAAGGCTTCCTGAACTAGGGGAGAAGTTCTTTGGAAACTTTCCATTCCCATACATGAATGGGTTTTTGCATCTTGGACATGCATTCTC TCTTTCGAAACTGGAGTTTGCTGCAGCTTATCATAGATTGAGGGGTGCCAATGTTCTTCTTCCGTTTGGCTTCCACTGCACTGGCATGCCCATAAAGGCT TCTGCTGATAAGCTTCGACGCGAAATTCAACAATTTGGTAACCCACCTGTATTCCCTGGTCCATCTGAGGAGCGAGAAGAACCGAAACCGGAGCAAGGGG ATGAAAATGCATCTGGTCAACCTAGTAAGTTCAAGGGCAAGAAGTCCAAGGCTGCATCTAAATCCGGTGGACAAGTGTTCCAGTGGGAGATCATGCGCAG TTTTGGGCTCTCTGATAGCGAGATTGCCAAGTTTCAGGACCCATACCAGTGGCTAAGGTTTTTCCCACCATTGGCAATGGAGGACCTTAAGGCTTTTGGA CTTGGTTGTGACTGGAGGCGCTCTTTTGTGACCACTGATATCAACCCATATTTTGATTCCTTTGTGCAGTGGCAGATGAGGAAGCTGTATGCTATGGGTA AGATTGTGAAGGATGTTAGATACACAATCTACTCCCCCTTAGATGGTCAACCGTGTGCAGATCATGACAGGGCATCTGGTGAAGGAGTTCTACCGCAGGA TTATACTCTAATAAAAATGGAGGTCTTAAAGCCATTTCCTCCGAAGTTAGGTCCTCTAGAGGGAAAGAATGTTTACTTAGCTGCTGCTACATTGAGGCCG GAGACCATGTACGGGCAGACAAATGCTTGGGTGTTACCCGAGGGGGAATATGGAGCCTTTGAAATTAATGAAACTGATGTGTTTGTTATTACACACAGAT CGGCCCTTAACCTTGCATATCAAAACTTTTCGAAGATTCCTCAGAAACCCACTTGCTTGTTGGAGCTCACTGGTTATGATCTTATTGGGCTTCCGCTGAG CTCTCCTCTTTCCTGCAACGAAGTCATATATGCTCTTCCAATGTTAACCATCTTAACCGACAAAGGTACAGGGATTGTCACCAGTGTGCCTAGTGATGCA CCTGACGATTATATGGCTCTTCATGATTTGAAAGCAAAACCTGCTTTTAGGGCAAAGTTTGGTGTGAAGGATGAGTGGGTAATGCCCTATGAGGTAGTGC CAATTATTAACATTCCAGAATTTGGGGATAAGGCTGCTGAAAAAGTCTGCTTGGATCTGAAGATTAAGAGCCAGAACGAGAAGGACAAGCTTGCTGAAGC TAAGAGGTTGACATACTTGAAAGGGTTTACAGATGGAACAATGATTGTTGGTAAATATGCAGGGATGAAGGTCCAAGAAGCAAAGCCATTGCTTAGAACC GAACTTATTGAGACAGGCCAGGGAATTATGTATAGTGAGCCTGAAAAGCGAGTTATGTCAAGGTCAGGTGATGAATGTGTCGTGGCACTTACAGATCAAT GGTACATAATCTATGGAGAAGCAGAGTGGAAGAAGTTGGCGGAGGAATGCCTAAGCAAACTGTTTCACATATCCTACATAACGAGGACATGTATGGTATC AACAAATCTCATCCCATTCAACCTTCGCAAATGA
AA sequence Show only first row Show all	>Lus10032320 pacid=23168489 polypeptide=Lus10032320 locus=Lus10032320.g ID=Lus10032320.BGIv1.0 annot-version=v1.0 MAEESGRKLTRRDSLLEIEANARKWWDEKDVFRAEPGERLPELGEKFFGNFPFPYMNGFLHLGHAFSLSKLEFAAAYHRLRGANVLLPFGFHCTGMPIKA SADKLRREIQQFGNPPVFPGPSEEREEPKPEQGDENASGQPSKFKGKKSKAASKSGGQVFQWEIMRSFGLSDSEIAKFQDPYQWLRFFPPLAMEDLKAFG LGCDWRRSFVTTDINPYFDSFVQWQMRKLYAMGKIVKDVRYTIYSPLDGQPCADHDRASGEGVLPQDYTLIKMEVLKPFPPKLGPLEGKNVYLAAATLRP ETMYGQTNAWVLPEGEYGAFEINETDVFVITHRSALNLAYQNFSKIPQKPTCLLELTGYDLIGLPLSSPLSCNEVIYALPMLTILTDKGTGIVTSVPSDA PDDYMALHDLKAKPAFRAKFGVKDEWVMPYEVVPIINIPEFGDKAAEKVCLDLKIKSQNEKDKLAEAKRLTYLKGFTDGTMIVGKYAGMKVQEAKPLLRT ELIETGQGIMYSEPEKRVMSRSGDECVVALTDQWYIIYGEAEWKKLAEECLSKLFHISYITRTCMVSTNLIPFNLRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	0	1
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10003545 [exp]	2.4	0.9022
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	3.0	0.9200
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	3.7	0.9101
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10009918 [exp]	6.4	0.8504
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	8.4	0.9039
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10004706 [exp]	10.2	0.8846
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	10.6	0.9004
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	11.4	0.9100
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	11.4	0.8873
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	12.8	0.9040

Compare expression of checked genes

Lus10032320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.