Plant FIBer expression Database

Lus10032321 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09620 620 / 0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
AT2G31170 44 / 0.0001 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2)
AT5G16715 43 / 0.0005 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024704
[exp]
857 / 0 AT1G09620 1696 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Lus10025653
[exp]
408 / 4e-141 AT1G09620 566 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G226700
[exp]
673 / 0 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Potri.003G003900
[exp]
669 / 0 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF09334 tRNA-synt_1g tRNA synthetases class I (M)
CL0258 DALR PF08264 Anticodon_1 Anticodon-binding domain of tRNA ligase
Representative CDS sequence
>Lus10032321 pacid=23168624 polypeptide=Lus10032321 locus=Lus10032321.g ID=Lus10032321.BGIv1.0 annot-version=v1.0
ATGAAACAGGAATTTAACTACTGGTACCCCTATGATTTGCGAGTCTCTGGAAAGGACCTTATCCAGAATCACTTGACATTCTCCATATACAACCATGTAG
CAATCATGGCTAAGAAACACTGGCCTCGTGGATTCAGGTGTAATGGGCACATCATGCTCAATTCCGAGAAGATGTCCAAGTCGACTGGAAATTTCAGAAC
ACTACGCGAGGCTATCCTGGAATTCTCTGCTGATGCGACGAGATTCTCGCTGGCTGATGCTGGAGACGGTGTTGATGATGCTAACTTTGTGTTTGAAACT
GCCAACTCTGCTATCCTTCGGCTTACCAAAGAGATTGCATGGATGGAAGAAGTTCTAGCTGCAGAATCCACTCTGAGGACTGGTCCTCCATCAACTTATG
CCGATAAGGTGTTTGAGAATGAGATAAACATTGCAGTTAAGATGACTGAGCAGAATTACAGTGATTGTATGTTTAGAGAGGCATTGAAGACCGGTTTTTA
CGATCTTCAAACAGCCAGAGACGAGTATAGATTCTCGTGTGGCAGCGGTGGCATGAACCGTGACCTAGTTTTGCGGTTTATGGATGTGCAGACTCGTCTC
ATCACTCCTATTTGTCCACACTATGGAGAACACGTATGGAGGGTGCTTTTAAAGAAGGAAGGGTATGCGGTTAAAGCCGGCTGGCCGCTAGCTGGTTCTC
CTGATCTGAAGCTGAAAGCTGCCAACAAATACTTGCAGGATTCCATTGTTCTGATGAGGAAGTTGCTCCAGAAACAAATCTCGGGTTCAAAGAAAGGCAA
CAAGAAGGGAGCCTCAGAAACCACCACCACAACAGAGAGCAAAGTAATCACTGGTTTGATATTTGTGAACGAGCAGTTCGATGACCAGAAAGCAATATGC
TTGAGGATTCTCCAGAGCAAGTTCGATAGCGAGACTCGAACTTTTGCACCCAATGAGGAGATATTAAAGGCGTTGCAGGAGAGTCCACTAGGGCAAGCTG
GGAACTTTAAGCAAGTCCAGAAGCAGTACATGCCATTCTTGAGATTCAAAAAGGATGAAGCGGTTGCGATTGGCGCTCAGGCATTGGATCTGAAGCTACC
CTTCGGGGAGATTGATGTCCTGAAGGAGAACCTGGAGTTGATCAAGAGACAACTCGGACTTGAAGAGGTCGAAGTTCTGTCTGCATCGAATCCCGAGCAC
CGTGCTCGAGCTGGCTCCCTCGCCACCCTCTTGACTCAGAATCCCCCATCACCTGGAAACCCCACGGCTATCTTCTTGACCAGGTCAGTCAAAACCCCAA
TTCGTACCGAATAA
AA sequence
>Lus10032321 pacid=23168624 polypeptide=Lus10032321 locus=Lus10032321.g ID=Lus10032321.BGIv1.0 annot-version=v1.0
MKQEFNYWYPYDLRVSGKDLIQNHLTFSIYNHVAIMAKKHWPRGFRCNGHIMLNSEKMSKSTGNFRTLREAILEFSADATRFSLADAGDGVDDANFVFET
ANSAILRLTKEIAWMEEVLAAESTLRTGPPSTYADKVFENEINIAVKMTEQNYSDCMFREALKTGFYDLQTARDEYRFSCGSGGMNRDLVLRFMDVQTRL
ITPICPHYGEHVWRVLLKKEGYAVKAGWPLAGSPDLKLKAANKYLQDSIVLMRKLLQKQISGSKKGNKKGASETTTTTESKVITGLIFVNEQFDDQKAIC
LRILQSKFDSETRTFAPNEEILKALQESPLGQAGNFKQVQKQYMPFLRFKKDEAVAIGAQALDLKLPFGEIDVLKENLELIKRQLGLEEVEVLSASNPEH
RARAGSLATLLTQNPPSPGNPTAIFLTRSVKTPIRTE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G09620 ATP binding;leucine-tRNA ligas... Lus10032321
[exp]
0 1
AT5G44500 Small nuclear ribonucleoprotei... Lus10013108
[exp]
2.6 0.9659
AT1G33250 Protein of unknown function (D... Lus10033260
[exp]
4.6 0.9501
AT3G54470 uridine 5'-monophosphate synth... Lus10039539
[exp]
5.7 0.9658
AT3G27080 TOM20-3 translocase of outer membrane ... Lus10035211
[exp]
7.2 0.9516
AT3G15000 cobalt ion binding (.1) Lus10043130
[exp]
7.5 0.9437
AT5G60960 PNM1 PPR protein localized to the n... Lus10034673
[exp]
8.1 0.9539
AT4G00100 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosoma... Lus10031124
[exp]
11.8 0.9514
AT5G16390 CAC1-A, BCCP-1,... BIOTIN CARBOXYL-CARRIER PROTEI... Lus10004868
[exp]
13.3 0.9469
AT3G57490 Ribosomal protein S5 family pr... Lus10027358
[exp]
15.1 0.9506
AT5G44500 Small nuclear ribonucleoprotei... Lus10003498
[exp]
15.2 0.9494

Lus10032321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.