Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57360 231 / 8e-76 unknown protein AT3G02370 176 / 6e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142200 [exp] 285 / 8e-97 AT3G57360 241 / 8e-80 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032322 pacid=23168656 polypeptide=Lus10032322 locus=Lus10032322.g ID=Lus10032322.BGIv1.0 annot-version=v1.0 ATGGGGACGGAAGGGTGGGAGTGCGGAAGTGCTTTCGGAGAATTGAGCGATGATGACGAGCTTAATTTGGTAGAGGATGATGACAGTGAACAACTTTTCA ACCTATGCGGTCCTTCAAAGAAACTTCAGTTCAGGAGTGATATCTCAAAGGCTCGATGGGATGAGGAGCTTGATATGGCTGAAGTAACTGAGAAGAAGGG GAAAATGTGGATCACAATGGGTATTATGAGAAGTGGCAAGACATATTGCTCAATCGAGGAGACACTCTTTTTGGCTGAAATTGGGGGATTGCATCTCATG GACTGTAATAATAATGTGCAATCTTCCTTGAAAGAAATCTATGAGATGCTTGCAGATGAAAAGAAGGGTTGCTGTTGGGAGCTTTTCGAAGCTTATAGGC ACTTGAAGTCCCTTGGTTATATCGTTGGCCGACACGGTATTCCATGGACAATGAAGGGTGTTAAGAAGGATGGGAGCAGCAACTCCTGTTCTTCCCAAGT TGATTTTGACAGCAACAATGTACATGATGATGGTGAATCAGAAGAAGATACAGTTTCCGTCACTAAAAAGCTGGGTGATTTGCAGATTAATGATGGCTTG AAGCCTGTATTGGACGCTCACCTTCCTAACAGCAAGTTCAGGAAGACTTCACCTGGTGACCCCAGCTTTCTCCTCTGCATATCCAGAGACAGCATGCCCC CATCAAGAGCTAAAATTGAAGCGCTGGAAAATCAGTGTGGAGGGATTCCTATAAAGGTTTGCCATGTAGAGCATGGCCGGGTCAGCTTTTTCAGCTTCAA GAAGATACAACTTCCAAAGCTTCCATAA
AA sequence Show only first row Show all	>Lus10032322 pacid=23168656 polypeptide=Lus10032322 locus=Lus10032322.g ID=Lus10032322.BGIv1.0 annot-version=v1.0 MGTEGWECGSAFGELSDDDELNLVEDDDSEQLFNLCGPSKKLQFRSDISKARWDEELDMAEVTEKKGKMWITMGIMRSGKTYCSIEETLFLAEIGGLHLM DCNNNVQSSLKEIYEMLADEKKGCCWELFEAYRHLKSLGYIVGRHGIPWTMKGVKKDGSSNSCSSQVDFDSNNVHDDGESEEDTVSVTKKLGDLQINDGL KPVLDAHLPNSKFRKTSPGDPSFLLCISRDSMPPSRAKIEALENQCGGIPIKVCHVEHGRVSFFSFKKIQLPKLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57360			unknown protein		Lus10032322 [exp]	0	1
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	5.3	0.7789
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	5.5	0.7290
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10000138 [exp]	7.4	0.7046
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10002462 [exp]	10.5	0.6441
AT3G07525		ATG10, ATATG10	autophagy 10, autophagocytosis...		Lus10008745 [exp]	11.3	0.7094
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	11.5	0.7628
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10034122 [exp]	15.9	0.7204
AT4G30830			Protein of unknown function, D...		Lus10035817 [exp]	18.5	0.6521
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	21.5	0.6920
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10021335 [exp]	22.0	0.7106

Compare expression of checked genes

Lus10032322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.