Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49320 184 / 4e-57 ATUSPL1 unknown seed protein like 1 (.1) AT5G25610 169 / 9e-50 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G60390 129 / 1e-33 PG1 polygalacturonase 1 (.1) AT1G70370 118 / 5e-30 PG2 polygalacturonase 2 (.1.2) AT1G23760 117 / 2e-29 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007011 [exp] 386 / 4e-136 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10006667 [exp] 373 / 1e-130 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1) Lus10006665 [exp] 370 / 4e-129 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10026333 [exp] 319 / 9e-111 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10040475 [exp] 220 / 3e-71 AT1G49320 191 / 7e-60 unknown seed protein like 1 (.1) Lus10042335 [exp] 196 / 2e-61 AT1G49320 184 / 6e-57 unknown seed protein like 1 (.1) Lus10007674 [exp] 169 / 2e-49 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10003263 [exp] 165 / 5e-49 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10022114 [exp] 167 / 6e-49 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114600 [exp] 270 / 2e-90 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1) Potri.004G153100 [exp] 222 / 2e-71 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114300 [exp] 222 / 3e-71 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.018G036700 [exp] 177 / 1e-52 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243700 [exp] 171 / 4e-51 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 171 / 1e-50 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 152 / 6e-44 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 152 / 7e-44 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 146 / 6e-42 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 146 / 7e-42 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [flax] [poplar] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Lus10032324 pacid=23168474 polypeptide=Lus10032324 locus=Lus10032324.g ID=Lus10032324.BGIv1.0 annot-version=v1.0 ATGGTCACAGTCGAGCTCCTCCATTTGGTGGTGGCTGTAGATGGAGGAAGAGACTTGCAGGGGAGCACTCAACATCTGCAGCATCAGCATCATATGATGA TGATGATGAGTCCAGCCTCAAACGTGTTCTTCAGGCTAAAAGACCTGAAACAAGGATCCCAAATGGAAGTCTACTTCCCCCGAAAAAACAAAGACCCGTC GAAAACCCCACATTTCCTCACCAGGGAAGAAGCAGATTCAATCCCATTCTCATCCAAACACCTCCCTTACCTTGTCGAACTCTTCTCGTACGAGCCGGGC TCCACAGAGGCCTCTGCCGTGGCAGAGGCCCTCGCGACTTGCGAGACCAAAGCGGTCAAGGGAGAGGCCAAGCTATGTGCCACCTCGTTGGAATCGATGC TCGACTTTGCTCAGCAGACGCTTGGGGGGGAGCAGCAGAAGCTCAAAGTGCTGACCACCACCCACTTGATAAGAAGTAGTAGTGAAGGAACCACCACCCA GCAGCTTGTGCAGAAGTACACCATTGTCGGTGAGCCGGAGGAACTGAAGGCGGCTACAAGGCAGGTGGCATGTCACACCATGGCATACCCTTATGCGCTT TTCTATTGCCATAGCCAGCTGTTCACTGAGAACAAAGTTTTCATGGTTTCATTGGAAAATACTGACAATGGAGACAGAGTTGATGCTCTTGCAATGTGTC ACATGGACACCTCTCAATGGGCCAAAGGACATATCTTGTTTAAGGTGCTTGGTGTTGAGCCTGGACAAACTGAAGTCTGCCATTTCTTCCCTGAAGATCA TCTCGTTTTCGTTCCCGCAGCCAGAAACCATTAA
AA sequence Show only first row Show all	>Lus10032324 pacid=23168474 polypeptide=Lus10032324 locus=Lus10032324.g ID=Lus10032324.BGIv1.0 annot-version=v1.0 MVTVELLHLVVAVDGGRDLQGSTQHLQHQHHMMMMMSPASNVFFRLKDLKQGSQMEVYFPRKNKDPSKTPHFLTREEADSIPFSSKHLPYLVELFSYEPG STEASAVAEALATCETKAVKGEAKLCATSLESMLDFAQQTLGGEQQKLKVLTTTHLIRSSSEGTTTQQLVQKYTIVGEPEELKAATRQVACHTMAYPYAL FYCHSQLFTENKVFMVSLENTDNGDRVDALAMCHMDTSQWAKGHILFKVLGVEPGQTEVCHFFPEDHLVFVPAARNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029318 [exp]	2.8	0.8802
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005776 [exp]	3.9	0.7787
					Lus10007991 [exp]	5.2	0.7992
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	5.7	0.8275
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019064 [exp]	6.0	0.8097
AT4G16566		HINT4	histidine triad nucleotide-bin...		Lus10007467 [exp]	7.4	0.7967
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	8.7	0.8577
AT1G60830			RNA-binding (RRM/RBD/RNP motif...		Lus10011201 [exp]	8.7	0.7714
					Lus10012313 [exp]	10.8	0.8665
					Lus10005608 [exp]	11.0	0.8034

Compare expression of checked genes

Lus10032324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.