Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60750 353 / 2e-120 CAAX amino terminal protease family protein (.1) AT1G14270 72 / 1e-13 CAAX amino terminal protease family protein (.1.2.3.4) AT2G20725 61 / 3e-10 CAAX amino terminal protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024708 [exp] 541 / 0 AT5G60750 444 / 2e-155 CAAX amino terminal protease family protein (.1) Lus10017536 [exp] 431 / 1e-150 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1) Lus10028751 [exp] 429 / 9e-150 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1) Lus10036748 [exp] 69 / 2e-12 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4) Lus10037179 [exp] 62 / 2e-10 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4) Lus10018585 [exp] 52 / 5e-07 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1) Lus10039818 [exp] 45 / 5e-05 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133800 [exp] 411 / 5e-143 AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1) Potri.001G097500 [exp] 410 / 9e-143 AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1) Potri.008G147600 [exp] 72 / 9e-14 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4) Potri.019G101100 [exp] 55 / 4e-08 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10032326 pacid=23168537 polypeptide=Lus10032326 locus=Lus10032326.g ID=Lus10032326.BGIv1.0 annot-version=v1.0 ATGTTGAGCTACTGTTGCTCTCAATCCTTATCTCATCGCCCGTTTCTCGTTCCTTCACTTTCCAGGAAGCTTACTGCTCTTAGCCGCCCTGGAAGCTCGT CTCTTTCAGCTAGGAAACCAAGTATCCTTCAATCCAATTCCAAGCTGAACAAGAATAGATGGAGGGTTTCGTGTTTTAGACAAGAAGATTTTACCCCTGC TACTAAGTCTGATGGCTTTGAGCCCTTTCTTCCTGAAGAGCCTTTGAAGCCAGAACCTGAACTTCCTGCTACTAGGTCTACTCATGCTGAAAGAGATTGG ATATTGAGCTTTAAAAAGGCAGTAGGTGTAGTGCGGAAAGCAGTTGGAAGTCGATGGACTGTACCATGGAGTGCAGATACCATAATCCAGGTAATGCTTT TATGGGTTGTCTCATTCTGGTTCATAGGGTCCTGGGTGGTCCCTTTTGCAGCCCACATGGCAGGATTGAACAAAGAATCACTGACATTCAGAGGACAAGC CTTATTCAGCCTAGTAACCGATGTCACCGAAGGTCTCGCCGGCATCGCGATCCTTCTTCGTTGCCTTTCAAGGTTCCGTCCCCTTTCATCCGATTGGTTT AGATTCAGCCTAAAAGGGAACTGGATGATCGATGTAGCTCTCGGGTGCCTTACATTTCCCCTTGTCAACCGGCTCTCGCAATTCAATCTCAGCCTACTGC CCATTCTTCCCTCCGCACCCGCGACGCTCTCGAGTGTGGAGCAATCGATCGCAGCACGAGATCCGGTGGCGATGGCTATTTACGCAATGGTGGTATCCGT TTGCGCACCGTTATGGGAGGAAATCGTCTTCCGGGGCTTCCTCCTGCCGTCCTTGACGAAATACATGCCGGTATGGTGTGCTATCTTGGTGAGCTCGGTC GCCTTTGCGCTTGCTCATTTCAATGTACAGAGGATGCTACCCCTTATATTCCTCGGCGTGGTTATGGGCGTTGTTTTTGCAAGGTCTGGAGGAAATCGTC TTCCGGGGCTTCCTCCTGCCGTCCTTGACGAAATACATGCCGGTATGGTGTGCTATCTTGGTGAGCTCGGTCGCCTTTGCGCTTGCTCATTTCAATGTAC AGAGGATGCTACCCCTTATATTCATCGGCGTGGTTATGGGCGTCATTTTTGCAAGGTCGAGGAACTTGCTGCCGCCCATGCTTCTGCACAGCTTGTGGAA CGGTTTCGTGTTCCTAGATCTGATGAAATAGCAGCTCCCTCCATTAGCTCATTTTAG
AA sequence Show only first row Show all	>Lus10032326 pacid=23168537 polypeptide=Lus10032326 locus=Lus10032326.g ID=Lus10032326.BGIv1.0 annot-version=v1.0 MLSYCCSQSLSHRPFLVPSLSRKLTALSRPGSSSLSARKPSILQSNSKLNKNRWRVSCFRQEDFTPATKSDGFEPFLPEEPLKPEPELPATRSTHAERDW ILSFKKAVGVVRKAVGSRWTVPWSADTIIQVMLLWVVSFWFIGSWVVPFAAHMAGLNKESLTFRGQALFSLVTDVTEGLAGIAILLRCLSRFRPLSSDWF RFSLKGNWMIDVALGCLTFPLVNRLSQFNLSLLPILPSAPATLSSVEQSIAARDPVAMAIYAMVVSVCAPLWEEIVFRGFLLPSLTKYMPVWCAILVSSV AFALAHFNVQRMLPLIFLGVVMGVVFARSGGNRLPGLPPAVLDEIHAGMVCYLGELGRLCACSFQCTEDATPYIHRRGYGRHFCKVEELAAAHASAQLVE RFRVPRSDEIAAPSISSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60750			CAAX amino terminal protease f...		Lus10032326 [exp]	0	1
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	1.7	0.9331
AT1G49850			RING/U-box superfamily protein...		Lus10002113 [exp]	1.7	0.8879
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	3.5	0.8773
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	4.9	0.8992
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	5.7	0.8852
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	6.2	0.8516
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	7.0	0.8654
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	9.2	0.8792
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10012796 [exp]	11.6	0.8464
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	13.3	0.8447

Compare expression of checked genes

Lus10032326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.