Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68600 91 / 7e-21 Aluminium activated malate transporter family protein (.1) AT2G17470 90 / 2e-20 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT1G18420 84 / 2e-18 Aluminium activated malate transporter family protein (.1) AT1G25480 84 / 3e-18 Aluminium activated malate transporter family protein (.1) AT3G18440 68 / 7e-13 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G08430 61 / 2e-10 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT3G11680 59 / 5e-10 Aluminium activated malate transporter family protein (.1) AT5G46610 59 / 6e-10 Aluminium activated malate transporter family protein (.1.2.3) AT4G00910 57 / 4e-09 Aluminium activated malate transporter family protein (.1) AT1G08440 57 / 4e-09 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024710 [exp] 186 / 3e-56 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10024711 [exp] 140 / 7e-41 AT3G18440 76 / 9e-16 aluminum-activated malate transporter 9 (.1) Lus10017222 [exp] 106 / 1e-27 AT3G18440 80 / 5e-17 aluminum-activated malate transporter 9 (.1) Lus10034301 [exp] 96 / 3e-22 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10027657 [exp] 86 / 7e-19 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 70 / 1e-13 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10035037 [exp] 61 / 3e-10 AT1G25480 295 / 3e-94 Aluminium activated malate transporter family protein (.1) Lus10000898 [exp] 59 / 1e-09 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10021272 [exp] 56 / 8e-09 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134100 [exp] 181 / 7e-54 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G097300 [exp] 176 / 7e-52 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.010G127400 [exp] 100 / 1e-23 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.008G118600 [exp] 94 / 1e-21 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.001G144300 [exp] 83 / 7e-18 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.015G053400 [exp] 77 / 6e-16 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.016G070000 [exp] 60 / 4e-10 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 57 / 4e-09 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G085900 [exp] 55 / 1e-08 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 55 / 2e-08 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10032328 pacid=23168665 polypeptide=Lus10032328 locus=Lus10032328.g ID=Lus10032328.BGIv1.0 annot-version=v1.0 ATGGACCGGCTTTACTCGATCGCTATTGGAGGGTTTGTAGCCCTTCTTGTGAATGCACTAGTGTTCCCCATTTGGGCAGGGGAACAGCTCCATAAGGAGC TTGTTGATAGCTTCAATGCAGGCACAGATTCGCTCGAAGAAGTACTTGAAGAGGAAGGACTGGAGCATCAAGAGTTCACCAGCACGGTGATGGATGTATT CCCGGACGAGCCTGCTTATACGAAATGTCGAACCATCCTCGACTTGTCCGCGAAACTCGAATCCCTGGCGAATTCGGCGAAATGGGAGCCACCACATGGA AGGTTTAGACAATTCTCCATCCATGGTCAGAGCACCATACAATCTCAGGGTCACGATCAAGCCCGAAATTCAAGAAGCAGTCACTCAGTCCGCGGAGCTA ATACGAAACATGAGAGACGAGATCAACAACAAACTTCGATGCTAAAAATGGTCTATGGTTCGGCTGAGCGGCTCCAACGCGCCATCGACTTGCAATCTTA CTTGCTGATCGTGTCAAACTTCGATCCCGAGACAAAAAAGATGACCTCCACAGCCTTCATGGACGATTCTTCAAGCCAGCTCCCGATAAATGGCAACGAA ACGGATAAGATGAGGACTCTGGAGAGCACAGCAGCACTCTCATTGGCAACTTTTACGTCATTGTTTCTTGAGTTTGTTGCTAGGCTTGATCACGTGGTTG AAGCTGTTGATGGGCTCTGCAAAATGGCCAGTTTCAAGCATGAGGACGTGGTGTAG
AA sequence Show only first row Show all	>Lus10032328 pacid=23168665 polypeptide=Lus10032328 locus=Lus10032328.g ID=Lus10032328.BGIv1.0 annot-version=v1.0 MDRLYSIAIGGFVALLVNALVFPIWAGEQLHKELVDSFNAGTDSLEEVLEEEGLEHQEFTSTVMDVFPDEPAYTKCRTILDLSAKLESLANSAKWEPPHG RFRQFSIHGQSTIQSQGHDQARNSRSSHSVRGANTKHERRDQQQTSMLKMVYGSAERLQRAIDLQSYLLIVSNFDPETKKMTSTAFMDDSSSQLPINGNE TDKMRTLESTAALSLATFTSLFLEFVARLDHVVEAVDGLCKMASFKHEDVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	0	1
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	2.6	0.8907
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	4.0	0.8850
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10020158 [exp]	4.1	0.8015
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	4.6	0.8590
AT2G37670			Transducin/WD40 repeat-like su...		Lus10003974 [exp]	7.2	0.8129
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10025699 [exp]	7.7	0.7992
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	8.9	0.8414
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	10.0	0.8576
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	13.9	0.8410
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10038560 [exp]	15.0	0.7925

Compare expression of checked genes

Lus10032328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.