Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64140 677 / 0 unknown protein AT5G64550 432 / 2e-143 loricrin-related (.1) AT5G09670 418 / 3e-139 loricrin-related (.1.2) AT4G12020 231 / 3e-64 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024712 [exp] 506 / 1e-177 AT1G64140 298 / 2e-97 unknown protein Lus10019307 [exp] 456 / 4e-153 AT5G64550 639 / 0.0 loricrin-related (.1) Lus10011515 [exp] 449 / 1e-150 AT5G64550 652 / 0.0 loricrin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097200 [exp] 866 / 0 AT1G64140 718 / 0.0 unknown protein Potri.003G134200 [exp] 854 / 0 AT1G64140 690 / 0.0 unknown protein Potri.003G023300 [exp] 453 / 1e-151 AT5G64550 716 / 0.0 loricrin-related (.1) Potri.001G206600 [exp] 452 / 3e-151 AT5G64550 675 / 0.0 loricrin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032329 pacid=23168491 polypeptide=Lus10032329 locus=Lus10032329.g ID=Lus10032329.BGIv1.0 annot-version=v1.0 ATGGAGAACAGGCTCCAGAACTTAGGTTTTCCTGCTAATTACCCTTCAAATGCATTCATGGTTATGCAAGCTGGAGGAGTTATACCTCAGTCTAGAGCCG ATACAGTCTTAAGGCTCGATTCCTTTGGTTCTTCTGTTCCCTTTGCTCCTCCTTCTAAGGGAGTGAAGCGGAAATGGAGTTTAATTGATGGAGCAATGAG TCAGCAGGTTGGCTCTTCATTATCTCTTGGGTTGGGCCGGCCATCGAGTTCATCTGATAGCAAAGGAAGTTCTGCAACTGGATGCACTACAATGTCATCT GCCAAGGAAACTGATGATGAGTCTTCGATGGATCTTGAGTTGGACTTCTCCCTCCATCTTGGCAATGAAAAGGTATCTAGCTCAAAAAAGTCTCTTACAT CGCATGCTAAAGGACTGGAATTTTCAACTAAAGTTGACCTGGAGTTGAGTTTGGCCACCGGACCCTCTGAATCCGAGATTACAAGTGTTCATGCTGGTTC TGCCTCACATGAATTTGCTACTGAATTGCCTGTAACTGCTGGCGGGCCTTTCTGCTTAGCTGATGTATCAACATCATACTACCAGAAAACAGGCTTTACA GTGATTCCAGCACAGACTACTTGCAACAAAGAGGCCAGCTTTCTTTTCAATAAGGTTCACAAAGCTAGTGATCCCATTGTCCGAGATCCTTCAGCTGGTA TGGTAGCACCAAATGACTCGGTCATCTGTACTTCTGGGCTACCACAACAGCAACGATCTCTACGTGGGTCTGGTTCTAAAACATGCCAAGTTGAAGGATG TGGGAAGGGGGCTAGAGGTGCTTCTGGTCGCTGTATATCTCATGGTGGTGGCAGGAGATGTCAGAAAGCAGGATGTCATAAGGGAGCTGAAGGACGTACT GTATACTGCAAGGCCCATGGAGGTGGTCGCCGATGTGAGTTCCTTGGTTGTACAAAAAGTGCAGAAGGCAGGACAGACTTTTGTATTGCCCATGGCGGTG GTCGGAGATGTAGTCATGAAGGTTGTGCTCGTGCTGCTAGAGGCAAATCTGGTTTATGCATTCGCCATGGTGGTGGGAAAAGATGTCAGAAGGAGAACTG TACCAAGAGTGCCGAAGGTCTTTCAGGTCTCTGCATTTCTCACGGAGGTGGCCGTAGATGTCAAGCCCCTGATTGTACAAAAGGAGCTCAAGGAAGTACA ATGTTCTGCAAAGCACATGGTGGTGGGAAACGCTGCACAGCTCCAGGTTGCACTAAGGGAGCCGAGGGGAGCACCCCTTTTTGCAAGGGTCACGGAGGAG GGAAAAGGTGTGCCTTCCAAGGTGGTGGGATTTGTTCTAAGAGTGTCCATGGAGGAACCAACTTCTGTGTAGCACATGGAGGTGGCAAGAGGTGTGCTGT TCCTGAATGCACAAGAAGTGCAAGAGGACGGACTGACTTTTGTGTTCGTCATGGTGGCGGCAAGCGATGCAAGTTTGAAGGGTGCGGGAAAAGTGCCCAA GGCAGCACAGATTTCTGCAAGGCACATGGTGGAGGAAAGAGATGCTCTTGGGGCCATCCTGGGTCAGGATATGGTGTTCAGCCTACTGCTGCTTGCAACT CTTTTGCGAGGGGCAAAACCGGTCTCTGTGCTCTACACAGTGGTTTGGTACAGGATAGACGGGTTCATGGTGGTATCACTTTGGGTACTATGGTCCAGGA TCCCAAAGGCAGCTGCCGCACCGGCAAGACAAAAGAAGTTGCTGCTCCAGATGACATGATTGTAGATGCTTCAAGTATGGGAGGAATTACTGCTGTTGTC TCGTCTGATGGAACCAATACAGAGGCAAAAGGAAACCAAATCGTTGGCAGGGAAGGCAGGGTTCATTTGTCGAAGCCTGCGTCTGTACCCGAAGGCAGGG TTCATGGTGGGAGTTTGATGGCATTGCTGGCAAATGGTTCTGGTACTGGTACTGGCTTTAGCAGCAGAGAATATCAGCATGCGCAATACCTATCAAGTGG TGGTTACTGA
AA sequence Show only first row Show all	>Lus10032329 pacid=23168491 polypeptide=Lus10032329 locus=Lus10032329.g ID=Lus10032329.BGIv1.0 annot-version=v1.0 MENRLQNLGFPANYPSNAFMVMQAGGVIPQSRADTVLRLDSFGSSVPFAPPSKGVKRKWSLIDGAMSQQVGSSLSLGLGRPSSSSDSKGSSATGCTTMSS AKETDDESSMDLELDFSLHLGNEKVSSSKKSLTSHAKGLEFSTKVDLELSLATGPSESEITSVHAGSASHEFATELPVTAGGPFCLADVSTSYYQKTGFT VIPAQTTCNKEASFLFNKVHKASDPIVRDPSAGMVAPNDSVICTSGLPQQQRSLRGSGSKTCQVEGCGKGARGASGRCISHGGGRRCQKAGCHKGAEGRT VYCKAHGGGRRCEFLGCTKSAEGRTDFCIAHGGGRRCSHEGCARAARGKSGLCIRHGGGKRCQKENCTKSAEGLSGLCISHGGGRRCQAPDCTKGAQGST MFCKAHGGGKRCTAPGCTKGAEGSTPFCKGHGGGKRCAFQGGGICSKSVHGGTNFCVAHGGGKRCAVPECTRSARGRTDFCVRHGGGKRCKFEGCGKSAQ GSTDFCKAHGGGKRCSWGHPGSGYGVQPTAACNSFARGKTGLCALHSGLVQDRRVHGGITLGTMVQDPKGSCRTGKTKEVAAPDDMIVDASSMGGITAVV SSDGTNTEAKGNQIVGREGRVHLSKPASVPEGRVHGGSLMALLANGSGTGTGFSSREYQHAQYLSSGGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64140			unknown protein		Lus10032329 [exp]	0	1
AT3G06780			glycine-rich protein (.1)		Lus10016828 [exp]	1.4	0.8981
AT3G07870			F-box and associated interacti...		Lus10012355 [exp]	3.5	0.8329
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	5.7	0.8394
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	6.0	0.8697
AT1G64140			unknown protein		Lus10024712 [exp]	10.4	0.8680
AT5G49610			F-box family protein (.1)		Lus10017086 [exp]	14.8	0.8141
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	15.2	0.8261
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	15.6	0.8232
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	16.2	0.8096
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	16.9	0.8090

Compare expression of checked genes

Lus10032329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.