Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64160 175 / 4e-56 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G23690 174 / 2e-55 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11210 157 / 7e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11190 147 / 7e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11180 138 / 2e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21110 62 / 5e-12 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 61 / 9e-12 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 61 / 1e-11 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 61 / 1e-11 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13662 60 / 2e-11 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024715 [exp] 339 / 7e-121 AT4G23690 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10024714 [exp] 327 / 9e-116 AT4G23690 186 / 3e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017538 [exp] 246 / 7e-84 AT4G23690 187 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10028749 [exp] 172 / 1e-54 AT1G64160 232 / 2e-78 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017539 [exp] 166 / 2e-52 AT1G64160 238 / 9e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 74 / 3e-16 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 70 / 5e-15 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 70 / 6e-15 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 69 / 9e-15 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G142602 [exp] 290 / 2e-101 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096800 [exp] 290 / 2e-101 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134800 [exp] 290 / 4e-101 AT1G64160 188 / 4e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142501 [exp] 285 / 1e-99 AT1G64160 179 / 1e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096680 [exp] 285 / 2e-99 AT1G64160 178 / 2e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134600 [exp] 275 / 1e-95 AT1G64160 182 / 5e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142702 [exp] 250 / 1e-85 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G097001 [exp] 250 / 1e-85 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134400 [exp] 207 / 8e-69 AT1G64160 184 / 1e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096440 [exp] 194 / 3e-64 AT1G64160 119 / 1e-34 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10032331 pacid=23168601 polypeptide=Lus10032331 locus=Lus10032331.g ID=Lus10032331.BGIv1.0 annot-version=v1.0 ATGGCTATCTCAAGAAGCAACATTGCTCTCTTCTTCATCTTCTTCATCTGCCTTTCCTCTGCCAACTCTTCAGCCAAGAAGAAGCAACACACTCCATGCA AGGAGCTAGTACTCTTCTTCCACGACATCATCTACAATGGGCATAACAAGGCCAATGCCACGGCGGCCATCGTGGCTGCTCCCGAGGGCGCCAACCGGAC CATCCTTGCCGGCGAGTTCCATTTCGGGAACATAGCCGTGTTCGACGACCCGATCACCCTCGACAACAACCTGCACTCCCCGCCCGTCGGCAGGGCCCAG GGGATGTACCTGTACGACACGAAGAACACGTTTACTGCCTGGCTAGGCTTCACTTTTTCTCTCAACAGCACCGAGCACCAAGGCACGATTAACTTCATGG GAGCCGACCCGCTTATGAACAAGACTAGGGATGTGTCGATTGTTGGCGGGACCGGCGACTTCTTTATGCACCGTGGGGTGGCGACCATCATGACGGACTC GTATGAAGGTGAAGTGTACTTTAGACTTCGAGTTGACATGAAATTTTACGATTGTTGGTGA
AA sequence Show only first row Show all	>Lus10032331 pacid=23168601 polypeptide=Lus10032331 locus=Lus10032331.g ID=Lus10032331.BGIv1.0 annot-version=v1.0 MAISRSNIALFFIFFICLSSANSSAKKKQHTPCKELVLFFHDIIYNGHNKANATAAIVAAPEGANRTILAGEFHFGNIAVFDDPITLDNNLHSPPVGRAQ GMYLYDTKNTFTAWLGFTFSLNSTEHQGTINFMGADPLMNKTRDVSIVGGTGDFFMHRGVATIMTDSYEGEVYFRLRVDMKFYDCW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23690			Disease resistance-responsive ...		Lus10032331 [exp]	0	1
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	3.9	0.9791
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	5.0	0.9822
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	5.1	0.9804
					Lus10012705 [exp]	11.9	0.9523
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	12.0	0.9770
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	12.5	0.9787
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	13.2	0.9782
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	14.1	0.9708
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10036194 [exp]	16.0	0.9602
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	16.1	0.9765

Compare expression of checked genes

Lus10032331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.