Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41610 952 / 0 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 940 / 0 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G17630 919 / 0 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT1G64170 810 / 0 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT3G53720 667 / 0 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G13620 645 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 373 / 5e-116 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT1G06970 352 / 1e-108 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G31910 351 / 2e-108 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT2G30240 318 / 4e-96 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017541 [exp] 942 / 0 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017540 [exp] 886 / 0 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10028748 [exp] 674 / 0 AT5G41610 517 / 1e-178 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10035312 [exp] 666 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 666 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10024717 [exp] 639 / 0 AT4G23700 538 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10025322 [exp] 625 / 0 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10040881 [exp] 409 / 8e-130 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 395 / 2e-124 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134900 [exp] 1103 / 0 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 1004 / 0 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 1003 / 0 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 925 / 0 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 924 / 0 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.006G054700 [exp] 697 / 0 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.007G105200 [exp] 676 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 436 / 3e-140 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 421 / 2e-134 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.019G123700 [exp] 386 / 1e-121 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10032332 pacid=23168517 polypeptide=Lus10032332 locus=Lus10032332.g ID=Lus10032332.BGIv1.0 annot-version=v1.0 ATGGCTCCAGGGAATGCAACATGCTATCCGCCGATGAAAGCCACCTCCAATGGCGTCTTCCAAGGCGACACCCCGCTCGATTATGCATTGCCTCTCGCCA TTCTCCAGATCTGCCTCGTCGTAGCACTCACTCGCATCCTCGCTTTCCTCCTCCGCCCCTTGCGCCAGCCTCGTGTCATCGCTGAGATCGTCGGAGGGAT ACTGCTAGGTCCATCAGCTTTGGGGAGAAACCAAAACTACCTCAACACTATCTTCCCACATAAGTCTCTCACAGTTCTGGACACACTAGCCAATCTGGGA CTGCTCTTTTTTCTTTTCCTAGTAGGGTTAGAACTCGACCCGAAATCCCTCAAAAGGACGGGAAAAAAGGCCTTCACCATCGCCATTGCAGGGATCAGCT TACCATTCATAATGGGGATTGGGACATCAGTCGTCCTCCGCTCAACCATTTCCAAAGGTGTCAACGGTCCGCCATTCCTAGTCTTCATGGGAGTGGCACT CTCCATCACCGCCTTCCCCGTGTTGGCTCGAATCCTAGCGGAACTCAAGCTATTAACGACAGACGTTGGCAGGATGGCCATGTCAGCAGCTGCGGTTAAC GACATCGCAGCGTGGATCCTCCTCGCACTCGCCATTGCCTTATCGGGAGATGGATCTCCTCTAGTGTCCCTATGGGTGCTCTTAGCCGGAGCTGGATTCG TTGCTGCTTGTGCCTTGGTACTGCCTCGAGTGTTCGGATGGATGGCGCAGCGTTGCCCTGACGGAGAACCTGTTGACGAAATCTATGTCTGTGTCACGCT GTGTGTTGTCCTGGCAGCTGGATTCGTCACTGACATGATCGGGATCCATGCCCTTTTCGGAGCGTTCATCGTTGGGATCCTCGTCCCGAAAGAAGGAGCG TTTGCTGGTGCGCTTGTTGAGAAGGTTGAAGATCTTGTTTCGGGACTTTTCCTGCCGCTGTACTTCGTATCGAGCGGATTGAAGACCAACGTTGCCACTA TCCAAGGTGCACAATCATGGGGGCTCTTAGTTCTGGTCATAACCACAGCTTGTTTTGGCAAGATCTTTGGCACAGTCGTCGTTTCCCTCCTCTGCAAAAT GCCATTCCAGGAAGCATTAGCCATTGGATTCCTGATGAACACCAAAGGATTGGTTGAGCTAATTGTTCTCAACATTGGCAGAGACAGAAAGGTTCTGAAC GAGCAAACATTCTCAATCCTAGTCCTGATGGCGATATTCACAACCTTCATCACAACTCCGCTCGTAACGGCGGTCTACAAGCCGGCGAAGCGAGCTTCGA AAACAGAGTACAAGCACAGAACGATCGAGAGGAAAGATCCAACCGATCAATTCAGACTTTTGGCATGCTTCCATTCTTCAAGAAACATACCTGGATTGAT CAACCTCATCGAAGCATCTCGAGGAACGGAGAAGCGTCAAGGCGTGTGCGTCTACGCTCTCCACCTTCTAGAGCTTTCCGAACGGCCATCGGCAATTCTT ATGGTTCACAAGGCCAGGAAGAACGGACTCCCGTTCTGGAACAAGATCCAGCAATCCGGTTCAAACCAGGTCGTCGTCGCGGCATTCGAGGCGTTCCGCC AGCTGAGCCGCGTCGTGATCCGTCCGATGACAGCGATCTCCCCCCTCGGTATCCGTCCGAAGAAAGCGATCTCCCCCGTCCAGACGATGCAGACCGACAT ATGCGAAAGCGCGGAGCGGAAGCGAGCGGCGATGATCATCCTCCCATTTCACAAACATCAGCGAATTGACGGAACCCTAGAGACGACCCGAACCGAGTTC CGAACCGTGAACCGGAAGGTTCTGGAGCGGGCTCCCTGCTCGGTTGCTATCCTCGTGGATCGGGGCTTCGGCGGGTCGACACACGTCGCCGCCAGTAACG TCTCGTCGAGTGTTACTGTGTTGTTCTTCGGGGGTAAGGACGACCGGGAGGCGCTGGCGTACAGCAGGAGGATGGCGGAGCATCCTGGAATCAGTCTGAC GGTGGTTCGCTACTCTGGCAGCAGCCTAGGTCAAGGTCCGGAAGGAGAAATCGTGACCGTTGATTTGAGCGAGGGATTCGGATCGTCGAGGTCTTCGGAT GAGGAGTGTTTGGCGGAGGTTAGGAAAGGGATTGCGGGGGAAGAAGGATCGATTTGCTATCAGGAGTTGGCGGTGAAGAGTGCGGCGGAGACAGCAGAGT CGATCCGAGGGTTCAGCAAGTGTAATCTGTTTCTGGTCGGGAGGATGCCGGAAGGAGCGGTGGCGGGGAGTTTGAGCGCGAAGATTGACTGCCCGGAGCT CGGACCGGTGGGGAATTTCTTGACGTCGCCGGAGTTCGTAACGTCAGCGTCGGTGCTGGTGGTGCAGCAGTACACTATTCCGACGGCGCCGCCGCGGCAC AGCTCGATGAGTTCCCGGAAGGTGGCGGGGTTGCCTGCCGGAGATTTGGAAGCCAGTGGAATTGAAGGCGTGTGA
AA sequence Show only first row Show all	>Lus10032332 pacid=23168517 polypeptide=Lus10032332 locus=Lus10032332.g ID=Lus10032332.BGIv1.0 annot-version=v1.0 MAPGNATCYPPMKATSNGVFQGDTPLDYALPLAILQICLVVALTRILAFLLRPLRQPRVIAEIVGGILLGPSALGRNQNYLNTIFPHKSLTVLDTLANLG LLFFLFLVGLELDPKSLKRTGKKAFTIAIAGISLPFIMGIGTSVVLRSTISKGVNGPPFLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVN DIAAWILLALAIALSGDGSPLVSLWVLLAGAGFVAACALVLPRVFGWMAQRCPDGEPVDEIYVCVTLCVVLAAGFVTDMIGIHALFGAFIVGILVPKEGA FAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVITTACFGKIFGTVVVSLLCKMPFQEALAIGFLMNTKGLVELIVLNIGRDRKVLN EQTFSILVLMAIFTTFITTPLVTAVYKPAKRASKTEYKHRTIERKDPTDQFRLLACFHSSRNIPGLINLIEASRGTEKRQGVCVYALHLLELSERPSAIL MVHKARKNGLPFWNKIQQSGSNQVVVAAFEAFRQLSRVVIRPMTAISPLGIRPKKAISPVQTMQTDICESAERKRAAMIILPFHKHQRIDGTLETTRTEF RTVNRKVLERAPCSVAILVDRGFGGSTHVAASNVSSSVTVLFFGGKDDREALAYSRRMAEHPGISLTVVRYSGSSLGQGPEGEIVTVDLSEGFGSSRSSD EECLAEVRKGIAGEEGSICYQELAVKSAAETAESIRGFSKCNLFLVGRMPEGAVAGSLSAKIDCPELGPVGNFLTSPEFVTSASVLVVQQYTIPTAPPRH SSMSSRKVAGLPAGDLEASGIEGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10032332 [exp]	0	1
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10035196 [exp]	6.0	0.9132
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	12.8	0.9104
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	13.5	0.9350
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	21.4	0.9208
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10030879 [exp]	24.2	0.9193
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	27.1	0.9184
AT5G10530			Concanavalin A-like lectin pro...		Lus10019234 [exp]	29.0	0.8647
					Lus10022098 [exp]	32.9	0.8970
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	32.9	0.9153
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	39.9	0.9027

Compare expression of checked genes

Lus10032332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.