Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07830 194 / 2e-64 ribosomal protein L29 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024720 [exp] 233 / 2e-79 AT1G07830 206 / 8e-70 ribosomal protein L29 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111100 [exp] 209 / 2e-70 AT1G07830 216 / 2e-73 ribosomal protein L29 family protein (.1) Potri.002G185800 [exp] 194 / 2e-64 AT1G07830 203 / 3e-68 ribosomal protein L29 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0346 [flax] [poplar] Ribo_L29 PF06984 [flax] [poplar] MRP-L47 Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Representative CDS sequence Show only first row Show all	>Lus10032334 pacid=23168583 polypeptide=Lus10032334 locus=Lus10032334.g ID=Lus10032334.BGIv1.0 annot-version=v1.0 ATGATGAGATTTTTTGGGAGAAGCCTCCTTGCTTCTGCGAGATCTGAATCATCCACAGCAACAGCTGCTACATCAGGTAATCATGGACATAACCCTCTTG AGCAGTTGAGATTTTTTGGGAGAAGCCTCCTTGCTTCTGCGAGATCTGAATCATCCACAGCAACAGCTGCTACATCAGCTAGTCTTGGACATAACCCTCT TGAGCAGTTCTTTGAGATAGACAGGAGAGAAGATGATGAGAAGCCTGTAGTATATGGTCGAAGTTGGAAAGCCTCCGAACTGCGGTTGAAATCTTGGGAT GATCTACAGAAGCTATGGTACGTCCTTATGAAGGAGAAGAACATGCTTATGACTCAACGCCAGATGCTTCATTCCCAGAACCTGAGATTTCCAAATCCAG AGCGCTTGCCGAAAGTTAGGAAGTCAATGTGTCGCATCAAACAAGTGCTCACCGAGAGAGCAATCGAAGATCCGGATCCAAGGAGGTCTGCAGAGATGAA GAGGATGGTAAATGCTTTGTAA
AA sequence Show only first row Show all	>Lus10032334 pacid=23168583 polypeptide=Lus10032334 locus=Lus10032334.g ID=Lus10032334.BGIv1.0 annot-version=v1.0 MMRFFGRSLLASARSESSTATAATSGNHGHNPLEQLRFFGRSLLASARSESSTATAATSASLGHNPLEQFFEIDRREDDEKPVVYGRSWKASELRLKSWD DLQKLWYVLMKEKNMLMTQRQMLHSQNLRFPNPERLPKVRKSMCRIKQVLTERAIEDPDPRRSAEMKRMVNAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07830			ribosomal protein L29 family p...		Lus10032334 [exp]	0	1
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	2.0	0.9626
AT4G14320			Zinc-binding ribosomal protein...		Lus10010195 [exp]	2.0	0.9614
AT2G46230			PIN domain-like family protein...		Lus10010134 [exp]	3.7	0.9403
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10014676 [exp]	5.7	0.9478
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	7.2	0.9442
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019681 [exp]	7.7	0.9310
AT5G27700			Ribosomal protein S21e (.1)		Lus10015173 [exp]	9.7	0.9441
AT1G41880			Ribosomal protein L35Ae family...		Lus10028254 [exp]	9.8	0.9398
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	10.2	0.9279
AT4G18100			Ribosomal protein L32e (.1)		Lus10020410 [exp]	11.5	0.9441

Compare expression of checked genes

Lus10032334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.