Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23110 340 / 6e-104 EMB2800, AtRLP37 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) AT5G25910 333 / 2e-101 AtRLP52 receptor like protein 52 (.1) AT3G05370 324 / 2e-97 AtRLP31 receptor like protein 31 (.1) AT3G05650 311 / 1e-92 AtRLP32 receptor like protein 32 (.1) AT1G71400 310 / 1e-92 AtRLP12 receptor like protein 12 (.1) AT3G28890 299 / 2e-89 AtRLP43 receptor like protein 43 (.1.2) AT1G71390 292 / 3e-86 AtRLP11 receptor like protein 11 (.1) AT3G11010 290 / 1e-84 AtRLP34 receptor like protein 34 (.1) AT2G33020 287 / 5e-84 AtRLP24 receptor like protein 24 (.1) AT3G05660 288 / 6e-84 AtRLP33 receptor like protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 1353 / 0 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 858 / 0 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10011064 [exp] 506 / 5e-165 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10011039 [exp] 480 / 3e-149 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10027580 [exp] 417 / 2e-136 AT5G62230 194 / 4e-53 ERECTA-like 1 (.1.2) Lus10014905 [exp] 399 / 1e-130 AT1G47890 240 / 4e-70 receptor like protein 7 (.1) Lus10003389 [exp] 325 / 2e-96 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 315 / 2e-92 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 315 / 2e-92 AT1G47890 424 / 3e-131 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G027400 [exp] 388 / 8e-121 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G008911 [exp] 388 / 1e-120 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.011G055000 [exp] 377 / 1e-116 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.001G128400 [exp] 372 / 1e-113 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.012G026600 [exp] 365 / 4e-113 AT2G33060 345 / 4e-106 receptor like protein 27 (.1) Potri.012G025300 [exp] 364 / 8e-113 AT2G33060 357 / 9e-111 receptor like protein 27 (.1) Potri.011G054500 [exp] 362 / 8e-111 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.012G025400 [exp] 365 / 9e-111 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G014625 [exp] 362 / 9e-111 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G029000 [exp] 361 / 4e-110 AT3G05660 373 / 2e-114 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032335 pacid=23168612 polypeptide=Lus10032335 locus=Lus10032335.g ID=Lus10032335.BGIv1.0 annot-version=v1.0 ATGAAGACGGCAAGCCCTGCAATTGTTGCTGTTATAGTAGTGGTAGCAGCTCTCTGCCATTTCTGCTCGACTGTTTCTCCGACCAAAATCCATTGCCTAG AGTCCGAAAGATCACTTCTCCTACGACTCAAACACGAAATCTCCGTCAATACTAGTCTATCATCATATACCCTGCCACCTGATCCAACACCAAACTTTTG GTCCTGGAGCGGAAACCACAAAGATTGCTGCTCGTGGGATGGAGTCACTTGCGATTCAAATTCGGGTTATGTCGTCGGTCTTGACCTGAGCAGCAGCTCG ATTCTGGGCGGAATCAACGAATTGAGCAGCATTTTCCGACTTCACCATCTCAGACGCCTTAACCTTGCTCATAACAAGTTGTTCGACTCGGGTTCGCCTT TCCCTTATGGTTTCAGTAACCTGTCCAGATTGACCCATCTCAACCTGTCACATGCAAGGTTTCGCGGTCCAATTCCGGACTCTGTATTTTCAACCCTTGG AATGTTGGTCTCCCTAGATCTTTCTTATAACACCGGTTCGAGCCTAGATATCGAGAAGCTACTCACGAACATGACCAGGCTCGAAGTGCTCCGTCTCGAC ACGTTAGATCTCTCCCGCGGCTTCAGCAACATGTCATTGTCATTGTTACCGGAAAACCTCCGGGAGCTGAGTTTGAGTAATTGCGACCTCACAGGAGAAC AAGTGCAGTTTCCATCCCTTCTACGTCTGAGATCCCTTACTCATTTGGTGCTATCTGAAAACTACAACCTTGCATGGAATGTCTCTGGCTATTCGTTCGT CCAGTTTCCTCATCTCGTGGATCTGCAGCTCTCCGATTGCGGGTTGTATGGGACAATGCCGAGTAGTGTTTTCTCGATTCCCAATCTCCAATGCCTTGAT GTTTCCAGCAACCCACTTCTTACCGGTACTCTGCCCGAATTTTCTACTGGCGGTAGCCCACTACTACAAGTCATCCGACTTTCGAATACAAAGTTTTCTG GGGAACTGCCTGATTCCATCAACAACTTGGATTCACTCCATGTTTTGGAACTCAATGCGTGCAACTTTACTGGGTTTGTCCCGTCTTCGATCGACAATCT CATTGAATTACATCGACTCGATTTTTACGGAAACAACTTCAATGGACCACTCCCGACATTACAGGCTTCATCCAACAAGATAGAGCTACTCGACTTTTCT TCCAATAATTTCAGTGGTACCATCCCCATATCTTACGGTCACTTCAACAACCTCGTGATGTTGAGGTTGAGGAATAATGACATACAAGGGCAGATTCCTC GTTTCCTATTCAGTAGTAGCAAGACGAGCGAAGGAAATATCTCTAGTGAGTTTCAGGGGTTGGGTTATCTCGATCTTTCGAGTAATGAGATAAGAGGAAA CATACCTTCATCCATTTGTGATTTTCAATTTCTAGAAGTACTAGATCTCTCCAATAATCATCTCAATGGTTCCATCCCATCATGTTTGGCTTCACTACAG TTTCTCGGCGTGCTAAACTTGAAAAACAACGAATTAAGCGGGACACTCCCGAAAGGTTTTGCAGAGGGATGCAGTTTAAAAACCCTTGACGTGAATCAGA ACAACCTCCATGGCCAAATTCCGGAATCTCTAGGCTTGTGTGGCGCTTTGCAAGTTCTAGATGTTGGAAAGAACTACTTGACCGGAAAGTTTCCAATTTG GTCAGAGGGTTTGCAGTACCTGAGAGTTCTGGTCTTGCACTCCAACCAGTTTAGCGGCTACATTGATTCTCAAACCCTAAATAGTGCATTTCCTGTGCTA CAAATATTTGATGTTTCTTCTAACAAATTTGTTGGTAAGCTGCCTTCAGGATGGTTTGGAAGTTGGAAGGCAATGATGAAGCCGGCTACAGATGAACTTA TCGGCTTTGGTTTCATTACCTCGCTTTCTCGGTTCGTTAACGCTCCTGGTTATGTATATCTGTACACATATTCGGTCAGGGTGAATGTTAAAGGAATTGA AAGGGAGTACGACAAGATTCTCATCATCGTCCTCCTACTTGATGTGTCCAACAACAACTTTACTGGCGAGATTCCCGAATCAATAGCTCATCTCGAATAT CTACAGCTGCTCAACCTCTCCAACAATCATTTTACAGGTCACATCCCAACATCTTTCGGAGAACTAAGCCAGCTGGAATCGCTAGACATATCATCAAACG CCCTCTCCGGCAACATCCCCTCACACCTCAGCAAGCTCACATTCCTATCGGTTTTCAACACGTCGCATAATTCGCTAAGTGGGGTGATTCCCCATGGAAG ACAATTCGACACTTTTGATGCAAATTCTTATCTAGGAAATCCTAAACTGTGTGGCACTCCATTGAGTAAACCTTGCTTTCAAGTGAAATCATCATCAACT GCAGGCACTAACCCAACAATTGAAGGAGGGGAAAGCGTGATTGATTGGGATTGTTTTCGAAACGGGATTGTATGTGGATGGGGATCGGGTGTTATTCTTG GAATTCTAGTAGCGATCATCATGTTTAGGAATCCTTTTGCCTTGCCTAAAACAAGAAGGGTTCGTAGTTTGGTAGTTCGTCCTTCCAGACGAAACTAA
AA sequence Show only first row Show all	>Lus10032335 pacid=23168612 polypeptide=Lus10032335 locus=Lus10032335.g ID=Lus10032335.BGIv1.0 annot-version=v1.0 MKTASPAIVAVIVVVAALCHFCSTVSPTKIHCLESERSLLLRLKHEISVNTSLSSYTLPPDPTPNFWSWSGNHKDCCSWDGVTCDSNSGYVVGLDLSSSS ILGGINELSSIFRLHHLRRLNLAHNKLFDSGSPFPYGFSNLSRLTHLNLSHARFRGPIPDSVFSTLGMLVSLDLSYNTGSSLDIEKLLTNMTRLEVLRLD TLDLSRGFSNMSLSLLPENLRELSLSNCDLTGEQVQFPSLLRLRSLTHLVLSENYNLAWNVSGYSFVQFPHLVDLQLSDCGLYGTMPSSVFSIPNLQCLD VSSNPLLTGTLPEFSTGGSPLLQVIRLSNTKFSGELPDSINNLDSLHVLELNACNFTGFVPSSIDNLIELHRLDFYGNNFNGPLPTLQASSNKIELLDFS SNNFSGTIPISYGHFNNLVMLRLRNNDIQGQIPRFLFSSSKTSEGNISSEFQGLGYLDLSSNEIRGNIPSSICDFQFLEVLDLSNNHLNGSIPSCLASLQ FLGVLNLKNNELSGTLPKGFAEGCSLKTLDVNQNNLHGQIPESLGLCGALQVLDVGKNYLTGKFPIWSEGLQYLRVLVLHSNQFSGYIDSQTLNSAFPVL QIFDVSSNKFVGKLPSGWFGSWKAMMKPATDELIGFGFITSLSRFVNAPGYVYLYTYSVRVNVKGIEREYDKILIIVLLLDVSNNNFTGEIPESIAHLEY LQLLNLSNNHFTGHIPTSFGELSQLESLDISSNALSGNIPSHLSKLTFLSVFNTSHNSLSGVIPHGRQFDTFDANSYLGNPKLCGTPLSKPCFQVKSSST AGTNPTIEGGESVIDWDCFRNGIVCGWGSGVILGILVAIIMFRNPFALPKTRRVRSLVVRPSRRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10032335 [exp]	0	1
AT3G55760			unknown protein		Lus10021897 [exp]	1.7	0.9102
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	3.5	0.8914
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10030726 [exp]	4.6	0.8798
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006621 [exp]	7.5	0.8517
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	7.5	0.8763
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10029465 [exp]	7.9	0.8024
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10005556 [exp]	9.8	0.8564
AT4G35320			unknown protein		Lus10026561 [exp]	10.2	0.8718
AT5G57610			Protein kinase superfamily pro...		Lus10006977 [exp]	11.3	0.8240
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	12.4	0.8492

Compare expression of checked genes

Lus10032335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.