Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11591 76 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024722 [exp] 124 / 1e-39 AT3G11591 74 / 1e-19 unknown protein Lus10016986 [exp] 54 / 8e-12 AT3G11591 44 / 1e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207600 [exp] 87 / 6e-25 AT3G11591 89 / 1e-25 unknown protein Potri.008G011620 [exp] 58 / 3e-13 AT3G11591 44 / 6e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032336 pacid=23168577 polypeptide=Lus10032336 locus=Lus10032336.g ID=Lus10032336.BGIv1.0 annot-version=v1.0 ATGGCGATCTGGACGTACCCGCCGACGAGGAAGCAAGCGGCGGCGATGGTGCTTATGTTCGCGACCGGAGCTTCTCTGTTCAGCTACGGGGCCTACATGT CTCTGAAGAACGTGGAACCTCAGCAAGAGCGTACAAGAGCTCGGAATGAATTTGTGAAAGAGCGGATCCGGAAGTTGATCGGAGAAGATTAG
AA sequence Show only first row Show all	>Lus10032336 pacid=23168577 polypeptide=Lus10032336 locus=Lus10032336.g ID=Lus10032336.BGIv1.0 annot-version=v1.0 MAIWTYPPTRKQAAAMVLMFATGASLFSYGAYMSLKNVEPQQERTRARNEFVKERIRKLIGED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11591			unknown protein		Lus10032336 [exp]	0	1
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	6.4	0.7097
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	10.4	0.7088
AT1G71730			unknown protein		Lus10042772 [exp]	20.5	0.6534
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	20.6	0.7011
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	21.5	0.6344
AT3G63390			unknown protein		Lus10024829 [exp]	21.9	0.6379
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10038782 [exp]	34.5	0.6167
AT3G15395			unknown protein		Lus10039067 [exp]	39.1	0.6061
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10014795 [exp]	44.9	0.5703
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	47.1	0.6259

Compare expression of checked genes

Lus10032336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.