Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42170 820 / 0 BED zinc finger ;hAT family dimerisation domain (.1) AT1G18560 70 / 8e-12 BED zinc finger ;hAT family dimerisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024723 [exp] 619 / 0 AT3G61600 759 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10005558 [exp] 330 / 7e-99 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1) Lus10036173 [exp] 48 / 4e-05 AT4G04980 96 / 2e-20 unknown protein Lus10000359 [exp] 40 / 0.0008 ND 35 / 0.002
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G126750 [exp] 991 / 0 AT3G42170 857 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126780 [exp] 913 / 0 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 913 / 0 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126500 [exp] 885 / 0 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.003G031700 [exp] 589 / 0 AT3G42170 581 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.001G383800 [exp] 372 / 9e-115 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G104000 [exp] 370 / 8e-114 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G125951 [exp] 272 / 3e-77 AT3G42170 313 / 2e-95 BED zinc finger ;hAT family dimerisation domain (.1) Potri.017G019466 [exp] 244 / 8e-67 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1) Potri.016G026066 [exp] 144 / 1e-35 AT3G42170 0 / 1 BED zinc finger ;hAT family dimerisation domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF02892 [flax] [poplar] zf-BED BED zinc finger CL0361 [flax] [poplar] PF05699 [flax] [poplar] Dimer_Tnp_hAT hAT family C-terminal dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10032337 pacid=23168499 polypeptide=Lus10032337 locus=Lus10032337.g ID=Lus10032337.BGIv1.0 annot-version=v1.0 ATGGCAACTCCTGAAGAGAATGCTCAACTGAAGGACTATCCAGCGCCTGCTCCTGAGGAAACCAGTCCGCTAGCCACTAAAGAGGAAAGTCAGAATGTAG CAGCGGCTGAAGAGAAAGATCAGCCATTGTCTTCACAAGATGTGACTATGGTACCTCGAGAAGAGACTGATCAAAAGTTGGCACCTGAAGAAGAGAACAA TGAAGAGGTGGTCTCTGAAGAAGATAACAAAAAGATGGAATCAGCAGAAGAAAGCAATAAGTTGTCATCCAAAGAAGTTAACGACGAGGACGTGCCATCA CAAGAAGATATTGATAAGATGGAGACGCAAGAAGAGAGCAATCAAGTGGTAGCTGAAAAAGATGACAATCAGAAGGTGGTGCGTGGAGAAGGTAGTAATC CTACATCTGTGTCTCAAGAAAGTGATAATCAGACCCGACCAGCACCAGAGGAGAAAGATCAGGGATCGATTCCAAACCAAGAGAGCAATGAGGTGTTGGC ATCACAAGAAGAGAACAGTCCAGTGTTGGTGTCACAAGAAGATGGTAGTCAGAAGGTGTTGCGACCGCAGGTGAACAATCAGACATCAGGACCACGGGAA GATAACATTGAGATGACACAGGAAGATGGCAATGAGATGGTGGTGTCGAAGGAGGAGGATACTGTGATGGCAGTTCCTGAGCAGGACAGTCAAATTACGG TGCCTCAGGAGAGCAGCCAAGTGGTGAATCCCCAGGAGAGCAGCCAGGTGGTGGATCCTCAGGAGGATAGCAGCCAAGTGACGGTGCATCAGGAGGATAC CAGTCAGGTGGCAGTGCCTCAGGAGGATAGTACTCAGGTGGCCTTGCCTCAGGAGAATAACAGTAAGGTGGCAGAACCTGAACAAGAAAGCAGTCAGATG GTGGGGCTTGAGGAGGGGGGAAATCAGATGACGATAACTGAGGAACAAAACAGTCAGATTGAGGTGCCTCAGGAGACCAGTCAGCCGGATGTGTCTCAGG ATAACACTCATTTGTTGGCTCCCAAACAGGAGAAGGGTCAGATGTTGGTGGCTAAGGGCAGCGATCAGATGGAGAACCCTGAGGACGAGAATAACCAAAT GACAGTGCCTCTGGAGAACAGTCAGTCAGAGGTGGTGCCTCGGGAGGAGAACAGTCAGTTTGCAGTCCCTCATGAGGAGAGCAGCCAGATGTTAGTGTCT CATGAAGACAACACTCAGTTGGTGGAGCCACAGGAAGAGAACAGCCAGATGATGCTGCCGCATGAAGACAACACTCACATGATGCTGTCTCAAGAACACG ACACTCAGATGCTAACGCCCCAGGAAGATAACACCCAGATGCTGGCGTCTCATGCAGAGGACCATCCAATGCTGATGTCACATGAAGAGAACAATCAGAT GATGGGGGCACATGAAGATAACAGTCAGTTAATAGGCAATCATCATATGGGTGACCAGCTGATGGTAATGGATGAAGACCACAATCAGCTAATGATCACC CATGATGAGGAGAACCAACTTGTTCTGACACATGAAGAAAATAACGAGCTTATGACTCCAGACTCGCAACCAAATAAGCGAAGGAGGAAGAAATCTGTTG TCTGGGAACACTTCACTATTGAATCGGTCGGCGATGGATGTAGAAGAGCTTGTTGTAAGCAGTGCAAGCAGAGTTTTGCCTATAGCACAGGTTCGAAAGT GGCTGGTACCAGTCACCTCAAACGACACATCGCTAAAGGAACATGTCTAGCTCTTTTACGCAATCAAGGACATCAGATGCTGACATATACCCCTGGTAGT GGTGGAAATGGAGGTACTAGTGAAACACCAAAACGCCGCTACAGATCTCCTAATACATCTTACTTTCCTTTTGATTCTGACCGTTGCCGGCACGAGATTG CTAGGATGATCATCATGCACGATTACCCACTTCACATGGTTGAGCATGCTGGATTTGTGGCTTTTGTCCAGAACCTTCAACCTCGATTCGGAATGGTGAG TTTCAACAGTGTTCAGGGGGATTGTGTTGCCACCTACCTGAGGGAAAAGCAAAATGTTATGAAGTTTATTGAAGGGCTTCCTGGACGTGTGAGCCTTACA TTGGATATGTGGACTTCTAGCGAAAGCATTGGCTATGTATTTATAACGGGGCACTTCATTGATAGTGATTGGAAGCCTCAGAAGCGGCTGCTTAATGTAG AGATGGAACCATATCCTGATTCAGATGCTGCCCTCAGCCATGCCGTGGCTTGTAGCCTTTCGGATTGGAGTTTGGAGGGTAAGCTGTTTTCTGTGGCTTT CAATCATCCAGTGGGTGAACCAGGGTTTGAAAGTCTTAGATCTCTGCTGTGCATAAAGAATACAAGTATTCTCAGTGGGCAGTTGGTGCTTGGCAATTGC ATTTCTCATACCCTGACAAGCATGGCAAAAGATGTGATGTGTGCATGTCGAGATCTTATCACGAAGATCCGCGACAGTGTCAAATATGTGAAGACCCTCG AGTCGAACGAGGAAAAGTTTCTCGAGCTCAAGGAACAGCTTCAAGTCCCCACAGATAAGAACCTCCGACTCGATGACCAGACTCAGTGGAATACAACCTA TGAGATGCTTCTGGCTGCTTCAGAACTGAAAGAAGTCTTTTCGTGCTTGGATACTTCTGATCCTCATTACAAAGAGGCACCATCGTTGCTGGAGTGGAAA CAAGTTGAAACAATCTGTTCAATCCTGAAACATCTGGTTGATGCAGCTAACATTCTGGGAGTCTCCACCAGCCCTATTTCAATCACTTTCTTCCACGAGG CCTGGCGGATTCAAGCTGAGCTCTCACGACTTGCTGCTATGGGGGATCCTTTTGTGGATGGTTTTATTAAAGGTTTGCAAGACAAGATTGAAAAGTATGT GAAGGATTGCAGCTTGGTTCTGGCAATTGCAGTAGTTATGGACCCTCGGTTCAAGATGAAGCTTGTTGAGTTCAGTTTCTCAAAGATATACGGCGATGAT GCTCCGACTTACATCAAGATTGTAGATGATGGAGTTCACGAGCTCTTCCAGGAATATGTGTCGCTTCCTCTTCCCTTGACCCCAACATATGAAGAAAATG GAAACGACCTGAACGGTAGAGAGAACCAGAGAGCTGTTGTGGATAATGGTCTTGCAGATTTTGACATGTATATCATGGAGACCACAAGCCACCAGACTAA GTCAGAGCTGGATATGTATTTGGATGACTCGTTGCTGCCTCGACTTCCGGACTTTGACGTGCTGAGCTGGTGGAGGCAGAACAAGATGAAGTATCCAACG CTGTCAAAGATGGCTCGTGACATATTGAGCATTCCGGTGTCCACAGCCTCGGCAGAGAACGTGTTCGACACGGTGCTCCCTAGGCAGCTGGATCAATACA GGAGTTCGTTGCGGCCAGAGACTGTGGAAGCCCTGGTGTGTGCAAAAGATTGGATGAAGCATGGTTTGTCCTCTGAAGCTGCTGCTGCTGCTGGTCCGAG TGATGGAGTTGTGAAGATGGAGTTCTGA
AA sequence Show only first row Show all	>Lus10032337 pacid=23168499 polypeptide=Lus10032337 locus=Lus10032337.g ID=Lus10032337.BGIv1.0 annot-version=v1.0 MATPEENAQLKDYPAPAPEETSPLATKEESQNVAAAEEKDQPLSSQDVTMVPREETDQKLAPEEENNEEVVSEEDNKKMESAEESNKLSSKEVNDEDVPS QEDIDKMETQEESNQVVAEKDDNQKVVRGEGSNPTSVSQESDNQTRPAPEEKDQGSIPNQESNEVLASQEENSPVLVSQEDGSQKVLRPQVNNQTSGPRE DNIEMTQEDGNEMVVSKEEDTVMAVPEQDSQITVPQESSQVVNPQESSQVVDPQEDSSQVTVHQEDTSQVAVPQEDSTQVALPQENNSKVAEPEQESSQM VGLEEGGNQMTITEEQNSQIEVPQETSQPDVSQDNTHLLAPKQEKGQMLVAKGSDQMENPEDENNQMTVPLENSQSEVVPREENSQFAVPHEESSQMLVS HEDNTQLVEPQEENSQMMLPHEDNTHMMLSQEHDTQMLTPQEDNTQMLASHAEDHPMLMSHEENNQMMGAHEDNSQLIGNHHMGDQLMVMDEDHNQLMIT HDEENQLVLTHEENNELMTPDSQPNKRRRKKSVVWEHFTIESVGDGCRRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCLALLRNQGHQMLTYTPGS GGNGGTSETPKRRYRSPNTSYFPFDSDRCRHEIARMIIMHDYPLHMVEHAGFVAFVQNLQPRFGMVSFNSVQGDCVATYLREKQNVMKFIEGLPGRVSLT LDMWTSSESIGYVFITGHFIDSDWKPQKRLLNVEMEPYPDSDAALSHAVACSLSDWSLEGKLFSVAFNHPVGEPGFESLRSLLCIKNTSILSGQLVLGNC ISHTLTSMAKDVMCACRDLITKIRDSVKYVKTLESNEEKFLELKEQLQVPTDKNLRLDDQTQWNTTYEMLLAASELKEVFSCLDTSDPHYKEAPSLLEWK QVETICSILKHLVDAANILGVSTSPISITFFHEAWRIQAELSRLAAMGDPFVDGFIKGLQDKIEKYVKDCSLVLAIAVVMDPRFKMKLVEFSFSKIYGDD APTYIKIVDDGVHELFQEYVSLPLPLTPTYEENGNDLNGRENQRAVVDNGLADFDMYIMETTSHQTKSELDMYLDDSLLPRLPDFDVLSWWRQNKMKYPT LSKMARDILSIPVSTASAENVFDTVLPRQLDQYRSSLRPETVEALVCAKDWMKHGLSSEAAAAAGPSDGVVKMEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42170			BED zinc finger ;hAT family di...		Lus10032337 [exp]	0	1
					Lus10037590 [exp]	5.1	0.9549
AT4G10710		SPT16	global transcription factor C ...		Lus10039410 [exp]	5.5	0.9344
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	5.5	0.9526
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10037161 [exp]	6.5	0.9193
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	6.8	0.9530
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	8.1	0.9483
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10013735 [exp]	8.7	0.9214
AT5G12930			unknown protein		Lus10031256 [exp]	9.7	0.8979
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	9.8	0.9504
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	11.5	0.9476

Compare expression of checked genes

Lus10032337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.