Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80150 506 / 5e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 188 / 2e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 182 / 3e-53 PPR336 pentatricopeptide repeat 336 (.1) AT1G55890 181 / 4e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 177 / 1e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 172 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 162 / 1e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 164 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 114 / 2e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G07740 108 / 9e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024724 [exp] 783 / 0 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 655 / 0 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019119 [exp] 577 / 0 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020073 [exp] 181 / 7e-53 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020055 [exp] 169 / 2e-48 AT1G61870 453 / 8e-159 pentatricopeptide repeat 336 (.1) Lus10007620 [exp] 156 / 1e-43 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007619 [exp] 155 / 3e-43 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 153 / 2e-42 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024025 [exp] 150 / 3e-41 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G062700 [exp] 565 / 0 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 554 / 0 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 194 / 3e-58 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 176 / 4e-51 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G125400 [exp] 167 / 1e-47 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 166 / 3e-47 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 160 / 4e-45 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 159 / 5e-45 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 148 / 2e-40 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.011G001100 [exp] 142 / 2e-38 AT1G61870 419 / 1e-145 pentatricopeptide repeat 336 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032338 pacid=23168547 polypeptide=Lus10032338 locus=Lus10032338.g ID=Lus10032338.BGIv1.0 annot-version=v1.0 ATGCTCACACTGAGGTCTATTCGCACATTCTTCCGTTACTCTACTGCTGTTGCATTCACTGATGCCTACAGTACTGCATCTAACGCCATCATGAAAATAA ATCTAATTGAAGAACCTGCTCTCGTCAAGCTTAAATGTGAGAGAGATCCTGAAAAGCTATATAATCTTTTCAAGGCCAATGCAAAGAATAGGCTTGTCAT TGAGAACCGGTTTGCATTTGAAGACACGATTTCCCGCTTAGCTGGTGCAAAGCGGTTTGATTACATTGAGGATTTGCTTGAACAACAAAAGTCTCTTCCA CAAGGCAGACGTGAAGGGTTTATTGTGAGGATTATTATGTTGTATGGAAAGGCTGGGATGGTTAAGCATGCCCTCAATACCTTTTATGATATGCATCATT CAAAAAGAACAGCTAAGTCTTTCAATGCTGCACTTATGGTATTGATAAAAACACGCGACATGGCAGTGATTGATGCATTTGTGAGAGAGGTTCCTAAGAA GTATGAAATAGAATTAGATTTGTTCTCTTTGAACATTGTCACTAAGGCCTTCTGTGAGATGGAGTATTTGGATAAGGCATTTTTGTTCATGGTAGGGATC GAAAAGTTGGGGATAAGGCCAGATGTGATAACATACACTACACTTCTTGCAGCTTTTTACAAACACAATAGGTTCGAAATTGCCAATGGTTTGTGGAATC TAATGGTACTTAAGGGCTGCTTCCCAAATGTTGCAACTTTCAATGTCAGAATTCAGTATTTGGTGAATAGAAGACAAGCATGGAAAGCAAATGATGTGAT GCTTCTGATGCAGAAAGTTGGTATGTTACCAGATGAGATCACTTATAACTTAGTTATCAAAGGTTTCTTTCGGGCTGGACACATTGAGATGGCGAAAAGG GTATATTCTGCGTTGCCAGGAAGACGATTTAAGCCCAATGTTAAGATTTACCAGACGATGGTTCATTATTTGTGTGAGGGTGGGGAACTTGATATGGCTT ATACTATGGGTACAAAGTGCATGAAAAAGAATTGGTTCTTGAGTGTGGACTCCATTTGTGCACTTCTTGAGGCCTTAACGAAGAATGGAAAGTTGGACAA GGCTAGGATGATCATGGCATTAGCTAGGAGGAAGGTGCCTCCTTTCTCTTCGAACCAATTAAGCACTTTTGAGTCAATACTAAACAGTAGTTGA
AA sequence Show only first row Show all	>Lus10032338 pacid=23168547 polypeptide=Lus10032338 locus=Lus10032338.g ID=Lus10032338.BGIv1.0 annot-version=v1.0 MLTLRSIRTFFRYSTAVAFTDAYSTASNAIMKINLIEEPALVKLKCERDPEKLYNLFKANAKNRLVIENRFAFEDTISRLAGAKRFDYIEDLLEQQKSLP QGRREGFIVRIIMLYGKAGMVKHALNTFYDMHHSKRTAKSFNAALMVLIKTRDMAVIDAFVREVPKKYEIELDLFSLNIVTKAFCEMEYLDKAFLFMVGI EKLGIRPDVITYTTLLAAFYKHNRFEIANGLWNLMVLKGCFPNVATFNVRIQYLVNRRQAWKANDVMLLMQKVGMLPDEITYNLVIKGFFRAGHIEMAKR VYSALPGRRFKPNVKIYQTMVHYLCEGGELDMAYTMGTKCMKKNWFLSVDSICALLEALTKNGKLDKARMIMALARRKVPPFSSNQLSTFESILNSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10032338 [exp]	0	1
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	5.4	0.8553
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10024724 [exp]	5.7	0.8013
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	9.6	0.8269
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	9.7	0.8160
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	11.2	0.7864
AT2G46200			unknown protein		Lus10000549 [exp]	11.9	0.8337
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	14.4	0.8073
AT1G27510			Protein of unknown function (D...		Lus10042125 [exp]	14.7	0.7979
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	17.2	0.8061
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	17.8	0.8092

Compare expression of checked genes

Lus10032338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.