Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61600 798 / 0 ATPOB1 POZ/BTB containin G-protein 1 (.1.2) AT2G46260 782 / 0 BTB/POZ/Kelch-associated protein (.1) AT4G01160 506 / 4e-175 BTB/POZ/Kelch-associated protein (.1) AT2G30600 50 / 6e-06 BTB/POZ domain-containing protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024723 [exp] 1001 / 0 AT3G61600 759 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10017545 [exp] 968 / 0 AT3G61600 820 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10028744 [exp] 882 / 0 AT3G61600 744 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166700 [exp] 831 / 0 AT3G61600 931 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.014G093700 [exp] 817 / 0 AT3G61600 945 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.003G135300 [exp] 813 / 0 AT3G61600 733 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.001G096100 [exp] 731 / 0 AT3G61600 655 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.001G468700 [exp] 42 / 0.0008 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF07707 [flax] [poplar] BACK BTB And C-terminal Kelch CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10032340 pacid=23168561 polypeptide=Lus10032340 locus=Lus10032340.g ID=Lus10032340.BGIv1.0 annot-version=v1.0 ATGAGGGAGCTGGGTGGTGGCGCAGACCTCTTCGAACCTCGGACGCTAATGGACTCCGATTTCTCTCCGGCGAGGACCGCCACCGGCCCCCCCGCCGAAA AAAACCCTGCCGATTCCGACTTCGGCTTCGCCTTCAACGATCGGAATTTCTCCGATAGGGTGCTGAAGATCGAGATTGTCCCTGATTTGCCCGACACCAA ATCCGACGGCGATGGATGCATCACCCTCGCCGAGTGGGCCCGCAACCGGAAGCGCCGGAGGGAGGAGATCAAGAAGGACAACAACCACATCATCAACATC AACAACGCTACTATTGTTCCTGGGATTGGAATTTTGGAATCTGATTCGTTTCCATTGGGTGGTCCTTGGTATGTTAGGCTGATTCTGGCGTGGGTTGATT TGATGGCAGAAGCGGACGTCATTGGGCAAAGCGCGGAGCAGGTGCTGAATTTGAATGTCCCTGATGCAGAGGAAACTTTGCCTTATGATAACCAAGATGA AGAAGTTGTTGCCATGATCGAGGAATCTGCTGCCGATGGTGGATTGAATTTGAATGAACAAGGTGATGATGCCCCTAGTGGTAGTGAATCTGGATGGAGC ATGGACTGTTCGACTGTTTTAAGAGTTAACACGATACATATAAGCTCACCGATATTAGCAGCGAAGAGTCCCTTCTTTTACAAGTTGTTTTCTAACGGGA TGAGGGAATCAGATCAACGACATGTAACCCTCCGGATTCACGAGTCTGAAGAAGCAGCCTTAATGGAACTCCTCAATTTTATGTATAGCAATACTTTGTC GACAACAACTCCTACTGCTTTGTTGGATGTATTGATGGCTGCCGACAAGTTTGAAGTTGTGTCTTGTATGAGATACAGCAGTCGGTTGCTTCGAAACTTG CCTATGACAAGTGAATCCGCTTTGCTTTACTTAGACCTTCCTTCTACCGTCCTGATGGCTGATGCGGGTCAGCCACTCACTGATGCCGCAAAGCAATTTT TGGCTGGACGATACAAGGATATTTCCAAGTTCCAGGAAGAGGTTCTTAACTTGCCGTTGGCTGGCATTGAAGCAGTAATATCCAGTGACGATCTCCAGGT GGCTTCAGAAGATGCTGTTTATGATTTTGTACTGAAGTGGGCTCGCATTCACTACCCCAGATTAGATGAACGACGAGAGGTGCTTGGCACGCGACTTGTG CGATTAATTCGCTTCCCGTTCATGACTTGCCGAAAACTGAGGAAGGTCTTAACATGTAACGACTTTGATCATGATGTTGCATCAAAAGTTGTTCTGGATG CTCTCTTTTTCAAGGGCGAGATACCGTACAGGCAGCGCGCACTTGCAGCAGAGGAAGCCAATGCTCCACACCGTCGCCTTGTGGAAAGATCGTACAAGTA CCGGCCGGTTAAGGTGTTGGAGTTTGAACTTCCACGTCAGCAATGTGTGGTGTACCTCGACCTAAAACGAGAGGAGTGTACGCATCTTTTCCCATCTGGC CGAGTTTATTCACAAGCGTTTCACCTCGGCGGACAAGGGTTCTTCTTGTCTGCCCACTGCAACATGGATCAACAAAGCTCTTTCCACTGTTTCGGACTAT TTCTAGGGATGCAAGAGAAAGGATCGGTGAGCTTTGGTGTCGATTACGAGTTTGCGGCGAGGTCAAAGCCGTCAGAGGAATTTGTGAGCAAGTATAAAGG GAACTACACGTTTACAGGTGGGAAGGCTGTTGGATATAGGAACTTGTTCGGAGTACCATGGACGGCGTTCATGGCCGAAGACAGCCCTTACTTCATCAAC GGCATCCTACATCTCAGAGCGGAGCTGACGATAACTCGATAA
AA sequence Show only first row Show all	>Lus10032340 pacid=23168561 polypeptide=Lus10032340 locus=Lus10032340.g ID=Lus10032340.BGIv1.0 annot-version=v1.0 MRELGGGADLFEPRTLMDSDFSPARTATGPPAEKNPADSDFGFAFNDRNFSDRVLKIEIVPDLPDTKSDGDGCITLAEWARNRKRRREEIKKDNNHIINI NNATIVPGIGILESDSFPLGGPWYVRLILAWVDLMAEADVIGQSAEQVLNLNVPDAEETLPYDNQDEEVVAMIEESAADGGLNLNEQGDDAPSGSESGWS MDCSTVLRVNTIHISSPILAAKSPFFYKLFSNGMRESDQRHVTLRIHESEEAALMELLNFMYSNTLSTTTPTALLDVLMAADKFEVVSCMRYSSRLLRNL PMTSESALLYLDLPSTVLMADAGQPLTDAAKQFLAGRYKDISKFQEEVLNLPLAGIEAVISSDDLQVASEDAVYDFVLKWARIHYPRLDERREVLGTRLV RLIRFPFMTCRKLRKVLTCNDFDHDVASKVVLDALFFKGEIPYRQRALAAEEANAPHRRLVERSYKYRPVKVLEFELPRQQCVVYLDLKREECTHLFPSG RVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFGVDYEFAARSKPSEEFVSKYKGNYTFTGGKAVGYRNLFGVPWTAFMAEDSPYFIN GILHLRAELTITR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10032340 [exp]	0	1
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10019104 [exp]	2.2	0.8247
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	10.2	0.7271
AT3G15140			Polynucleotidyl transferase, r...		Lus10005381 [exp]	12.2	0.7802
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	12.7	0.7986
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10031918 [exp]	13.4	0.7217
AT4G00755			F-box family protein (.1.2)		Lus10038879 [exp]	18.7	0.6663
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	21.5	0.7566
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	23.6	0.7032
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011260 [exp]	23.7	0.7547
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002355 [exp]	25.1	0.7101

Compare expression of checked genes

Lus10032340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.