Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15550 625 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 80 / 1e-15 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G64730 75 / 7e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 74 / 7e-14 WD-40 repeat family protein / notchless protein, putative (.1) AT5G16750 71 / 7e-13 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G08390 71 / 8e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 69 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 68 / 2e-12 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G48630 67 / 4e-12 RACK1B_AT receptor for activated C kinase 1B (.1) AT5G23430 66 / 3e-11 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024727 [exp] 861 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037439 [exp] 793 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041271 [exp] 789 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 96 / 7e-21 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 90 / 4e-19 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039597 [exp] 77 / 9e-15 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 75 / 3e-14 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10023563 [exp] 72 / 4e-13 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10002860 [exp] 70 / 6e-13 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093300 [exp] 668 / 0 AT5G15550 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G058000 [exp] 79 / 2e-15 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.006G045800 [exp] 79 / 2e-15 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.012G060800 [exp] 72 / 3e-13 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.001G221000 [exp] 70 / 5e-13 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G049500 [exp] 70 / 2e-12 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.002G051900 [exp] 68 / 2e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G212800 [exp] 66 / 9e-12 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G096900 [exp] 66 / 2e-11 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 65 / 2e-11 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0072 [flax] [poplar] Ubiquitin PF08154 [flax] [poplar] NLE NLE (NUC135) domain
Representative CDS sequence Show only first row Show all	>Lus10032344 pacid=23168550 polypeptide=Lus10032344 locus=Lus10032344.g ID=Lus10032344.BGIv1.0 annot-version=v1.0 ATGGACACTGACATGGAAGAACGGCAGATTCAAGTTCGATTCTTCACAAAACTGAAGCCCCCCTTCAAAGCTCCGCCCACCGCCATTACAATCCCTGCTA CTGTTACCCGTCTCGGTCTCTCCTCTATTGTCAATAGCCTCCTCCAAGCTGTTACTCCTGAATGGGAGTCTCAACCCTTTGACTTTCTGATTGATGGGGA GCTGGTTCGAATGTCCCTTGGCCAGTTTCTCCTAGCTAAAGGAATTTCGGCTGAGAGGACATTGGAAATTGAATATATAAAGGCAGTGGTTCCGAGGAAG GAGGAGGATCCTTCATTGCATGACGATTGGGTCAGTGCAGTTGATGGTTCTTGTTCTAGGTTTATCCTGACTGGAAGCTATGACGGTTTTGGAAGGGTGT GGAAAGCTGCCGGAATATGTACTCATATACTTGAGGGTCACACTGATGCAATTACCTCTGTCACTGTCATTAACCGTGAAGGTAATGCAACTCTTGCTAC TGCGTCAAAAGATCACACTGTTAGACTGTGGAAGATGGATGCAGAAGAACCTAAGAAATCTCCTGCCAAGATTAGGCCATTCAAGATTTTGCGTGGTCAC AATGCATCTGTGCAGAGTGTTGCAGCTCAAACATCTGGAAGCATGGTTTGTTCTGGTTCTTGGGATTCTACGATCAACTTGTGGCAGACGAATGATTCTG CTGCAGAAGACAACTCAGTCTCAATTAAGAAAAGAAGAACGAAAAATGATACTCAGGATTCTCAATTGGAGGGTGCAGCAGGCTCTACGTTGGTGGGTCA TACACAGTGTGTATCTGCAGTTGTATGGCCAGAAGCTGATACAATCTATTCAGCATCCTGGGATCATTCCATCAGAAGATGGGATACCGAGACGGGCAAA GACGTGATGAGCATATTTTGTGGAAAAGCCTTGAATTGCCTTGATATAGGAGGTGAAGGGTCAGCCCTTGTGGCCGCAGGAGGATCAGATCCCGTATTGA GGATATGGGATCCACGAAAGCCAGGAACTTCTGCTCCTGTGTACCAGTTTTCTGCCCATAGTTCATGGATTTCAGCATCCCAGTGGCACAAGAAATCTCC TTTCCACTTACTTTCTGCATCTTATGATGGACAAGTCATGTTGTGGGATCTAAGAACTGCGTGGCCTCTTTCTGTCATCAAGTCCCATGAAGACAAGGTA TTATGTGCTGATTGGTGGAAAGGGGAAAGTGTAGTCAGTGGTGGCGTAGACTCGAAGCTTCGAATTCATTCTGGAATTTCTGTAGTAACTTGCAGTAAAA GGCAAGATAAGCCAGAGGTTTTAGGAGCAGCAGCAAAGCCAAAGGCATCTGATTCTTAA
AA sequence Show only first row Show all	>Lus10032344 pacid=23168550 polypeptide=Lus10032344 locus=Lus10032344.g ID=Lus10032344.BGIv1.0 annot-version=v1.0 MDTDMEERQIQVRFFTKLKPPFKAPPTAITIPATVTRLGLSSIVNSLLQAVTPEWESQPFDFLIDGELVRMSLGQFLLAKGISAERTLEIEYIKAVVPRK EEDPSLHDDWVSAVDGSCSRFILTGSYDGFGRVWKAAGICTHILEGHTDAITSVTVINREGNATLATASKDHTVRLWKMDAEEPKKSPAKIRPFKILRGH NASVQSVAAQTSGSMVCSGSWDSTINLWQTNDSAAEDNSVSIKKRRTKNDTQDSQLEGAAGSTLVGHTQCVSAVVWPEADTIYSASWDHSIRRWDTETGK DVMSIFCGKALNCLDIGGEGSALVAAGGSDPVLRIWDPRKPGTSAPVYQFSAHSSWISASQWHKKSPFHLLSASYDGQVMLWDLRTAWPLSVIKSHEDKV LCADWWKGESVVSGGVDSKLRIHSGISVVTCSKRQDKPEVLGAAAKPKASDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	0	1
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	1.4	0.9015
AT1G42440			unknown protein		Lus10013232 [exp]	1.7	0.9175
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	2.4	0.8930
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	6.5	0.8828
AT5G61330			rRNA processing protein-relate...		Lus10012469 [exp]	7.1	0.8511
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	7.3	0.8811
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	8.1	0.8275
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	8.1	0.8895
AT1G53645			hydroxyproline-rich glycoprote...		Lus10005585 [exp]	8.3	0.8413
AT2G31740			S-adenosyl-L-methionine-depend...		Lus10016656 [exp]	8.5	0.8858

Compare expression of checked genes

Lus10032344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.