Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59140 239 / 6e-67 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G13080 199 / 2e-53 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G60160 196 / 1e-52 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G62700 196 / 2e-52 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G21250 193 / 2e-51 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G60970 192 / 2e-51 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT1G04120 185 / 7e-49 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT2G47800 184 / 2e-48 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G13100 182 / 1e-47 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G13090 181 / 1e-47 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030718 [exp] 305 / 4e-90 AT3G13080 1249 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10027567 [exp] 254 / 7e-72 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 252 / 3e-71 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10017548 [exp] 240 / 4e-67 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10028740 [exp] 216 / 2e-64 AT3G59140 340 / 1e-106 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10042023 [exp] 197 / 9e-53 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10013201 [exp] 196 / 1e-52 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10030716 [exp] 193 / 5e-52 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10024965 [exp] 194 / 1e-51 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G095600 [exp] 274 / 7e-79 AT3G59140 1639 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.015G023800 [exp] 271 / 6e-78 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.003G135800 [exp] 257 / 4e-73 AT3G59140 1580 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.016G122901 [exp] 248 / 4e-72 AT3G59140 1144 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033500 [exp] 247 / 1e-69 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033600 [exp] 244 / 2e-68 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.010G055200 [exp] 200 / 1e-53 AT3G13080 1227 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124506 [exp] 198 / 3e-53 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.014G193400 [exp] 198 / 3e-53 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.T124406 [exp] 197 / 5e-53 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10032345 pacid=23168697 polypeptide=Lus10032345 locus=Lus10032345.g ID=Lus10032345.BGIv1.0 annot-version=v1.0 ATGAATCATTACATACAGAAAGGTTCATCATCATCATCAGCTGGTTCTTTTGCCATGTTGAAGGCCGTCATTACCTGGAAATGGAGAGGCATTTGGATTT CAGGATTATGTGCTTTGATCAAGGTCCTCACTTTATCCACTGGACCACTCTTCTTAAAAGCTTTCATTGATGTAGCTCAAGGGAAATCAGCTTTTGAATT CCAGGGTTATCTCCTGACATTACTCCTATTCCTATCAAAATGCTTGGAGTCACTGTCTGAAAGGCAGTGGATTTTCAGGACTAGGTTGGTTGGGGTCCAA TTAAGATCGATGCTGTCAGCATCGATCAATAAGAAGCAACTTAGGCTCTCAAATGCAGCCAAATGCAGCCTTCGTCTTCTTCAAGAAACGATTCGTACCA TTCCAGATGTAGTTGGGGTCTTCATTGAGGCAAAGGTTTCGTTGGATCGTATCGTGAGGTTTCTTGAAGCTCCTGAGCTGCAGAAGATAACAGATGTCAA TAGGCACGAGTACTCCAGTGGAGATCATCAAGGGCATGATAAGTCTGTAATCATCAATGCAGCTGAGATCTCATGGGGTGTTGAACCTTCATCAAAGGTT ACATTAAGAGCCATAAACTTGGAAGTCAAGAAAGGCGAAAAGATTGCTAGTTGTGGCGAGGTTGGATCAGGGAAGTCAACTCTTTTAGCAGCTGTACTTG GAGAAGTTGCAAGGATCAAGGAACAGTTGAAGTATATGAATGCAGATGTTTATCTCCTGGATGATCCTTTCAGTGCTGTTGATGCTCATACAGCAACTAA CCTTTTCAATAGATATGTAATGGAAGCATTGTCTGGGAAGACAGTCTTGCTGGTGACTCATCAAGTTGACTTCCTTCCTGCTTTTGATTCCATTTTGCTG ATGTCTGCTGGTGAAATCGTAAAGGCTGAAAAATCTGCTGGATTCCAAAATACCACGGCTTCTTCGGGAGGAGAAATTCAGCGAATTCGCGTTACAGACC AGTCAGACCATCATGCACCTCTTCCAAAGGAAAAAGATCAACTGATCAAGCAAGAGGAAAAGGAAACAGGAGACACTGGTTTCAAGCCTTACTTGCAGTA CTTAAGCCATGAAAAGGGACTTATGTACTACTCATTGGCAGCTATACTCCAAACTTTCTTCGTACTATTCGGCCTTCTGCAAAACTATTACTTGGCTGCC CGAATCCAGGATCCCCGCCCAAGGAAAGCGAATCTATTAACAGTTTACTCAGTCATTGGAGGAATCATTGCAGTTCTCCTGATTATCAGGTCAAGGGTTG TGGTTCTGTTAGGCTGTGGGACATCAGAATCCATCTTCTCAAAGCTGCTAGTTTCTCTTTTCAGAGCACCAATGTCCTTTTATGATTCCACACCTTTGGG AAGGGTTCTAAGTAGAGTATGTATCAAGCAATCTACCGTGCAGCCTAAGATTGGACTCCATGATTTGAGGTCTCATCTAGCTATAATCCCTCAGGATCCA ACCCTCTTCGTCGGAACTGTCAGGTACAATCTGGACCCGTTGTCACAACATCAGGAGATCTGGCTTGTCTTGCAGAAATGCCATCTCAGGGAAGCCATCC TGCAGAAAGAAGAAAGGCTGAATGCAACAGGGGCACAAAATGGAAGCAACTGGAGCATGGGGCAGATGCAGGTGTTCTGCCTGAGGAGAGTAATCCTGAA GAGGAGCAGGATTCTTGTACTGGACGAAGCGACAGCTTCGGTCGACAATGCAACAGATTCGATCCTTCAGAGAACAATCAAACCCGAGTTTGAGGATTGT ACTGTCATCACAGTGGCTCACAGGATCCCTACTGTCATGGACTGCAACAAAATTCAGTTTAATAACGATGTTGTTTTAGGTTGTTCGTTGATATGGAAAC TGGTCGAGTACGATGAGCGGTTGGAGCTGATGAAGCGTGAGACTTCACTGTTTGCGCAGCTTGTAAGAGAGTATTGGTCACGTTCGTCATCAAAGTTAGA CGAGCACCTTTGA
AA sequence Show only first row Show all	>Lus10032345 pacid=23168697 polypeptide=Lus10032345 locus=Lus10032345.g ID=Lus10032345.BGIv1.0 annot-version=v1.0 MNHYIQKGSSSSSAGSFAMLKAVITWKWRGIWISGLCALIKVLTLSTGPLFLKAFIDVAQGKSAFEFQGYLLTLLLFLSKCLESLSERQWIFRTRLVGVQ LRSMLSASINKKQLRLSNAAKCSLRLLQETIRTIPDVVGVFIEAKVSLDRIVRFLEAPELQKITDVNRHEYSSGDHQGHDKSVIINAAEISWGVEPSSKV TLRAINLEVKKGEKIASCGEVGSGKSTLLAAVLGEVARIKEQLKYMNADVYLLDDPFSAVDAHTATNLFNRYVMEALSGKTVLLVTHQVDFLPAFDSILL MSAGEIVKAEKSAGFQNTTASSGGEIQRIRVTDQSDHHAPLPKEKDQLIKQEEKETGDTGFKPYLQYLSHEKGLMYYSLAAILQTFFVLFGLLQNYYLAA RIQDPRPRKANLLTVYSVIGGIIAVLLIIRSRVVVLLGCGTSESIFSKLLVSLFRAPMSFYDSTPLGRVLSRVCIKQSTVQPKIGLHDLRSHLAIIPQDP TLFVGTVRYNLDPLSQHQEIWLVLQKCHLREAILQKEERLNATGAQNGSNWSMGQMQVFCLRRVILKRSRILVLDEATASVDNATDSILQRTIKPEFEDC TVITVAHRIPTVMDCNKIQFNNDVVLGCSLIWKLVEYDERLELMKRETSLFAQLVREYWSRSSSKLDEHL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10032345 [exp]	0	1
					Lus10001193 [exp]	3.3	0.7029
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10024462 [exp]	4.1	0.7643
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010776 [exp]	5.7	0.7536
AT3G47570			Leucine-rich repeat protein ki...		Lus10030587 [exp]	7.2	0.6912
					Lus10003753 [exp]	10.2	0.7357
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	11.8	0.7357
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	13.2	0.7357
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	14.5	0.7357
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	18.3	0.6448
AT2G37370			unknown protein		Lus10009063 [exp]	20.5	0.7349

Compare expression of checked genes

Lus10032345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.