Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14190 223 / 1e-71 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 220 / 1e-70 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 160 / 2e-47 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 155 / 2e-45 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 152 / 3e-44 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 147 / 2e-42 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 130 / 5e-36 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 128 / 2e-35 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030463 [exp] 259 / 1e-85 AT1G14185 504 / 5e-176 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 255 / 7e-84 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030462 [exp] 253 / 2e-83 AT1G14185 567 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 251 / 7e-83 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 246 / 4e-80 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 245 / 6e-80 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 244 / 2e-79 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030458 [exp] 239 / 5e-78 AT1G14185 481 / 5e-167 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030456 [exp] 239 / 2e-77 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087400 [exp] 225 / 3e-72 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 223 / 2e-71 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 220 / 3e-70 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 156 / 9e-46 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 156 / 1e-45 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 155 / 1e-45 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 155 / 4e-45 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 149 / 1e-43 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10032346 pacid=23168557 polypeptide=Lus10032346 locus=Lus10032346.g ID=Lus10032346.BGIv1.0 annot-version=v1.0 ATGACTTCAAATCTGGACGATGTAGCAGGGAAGTCCTTTGACTACATTGTAGTAGGCGGAGGGACAGCCGGTTGCCCTATTGCAGCTACCCTGTCGGAGA AATTCTCCGTTCTACTAATCGAGCGCGGTGGCTCCCCATATGGGGACCCGTGGATAACAGAGAAGCGCTTCCTTGGCTTCTCATTGCTCCAAACTGATGA ATTCTCATCGATCTCCCAATCATTCACTTCCAAGGAAGGAGTAGCAAACTTCAGAGGAAGAGTCCTTGGAGGGACGACAGCTATAAATGGAGGGTTCTAC AGTCGAGCCAGCGAGGAATTCGTCACGAAATCGGGTTGGGATAAACAGCTGGTGAAGGAATCTTACGAATGGGTTGAATCTAAAATCATTACTAAACCTG AGCTGACAACGTGGCAAGCCGCTGTCAGGGCTGGATAA
AA sequence Show only first row Show all	>Lus10032346 pacid=23168557 polypeptide=Lus10032346 locus=Lus10032346.g ID=Lus10032346.BGIv1.0 annot-version=v1.0 MTSNLDDVAGKSFDYIVVGGGTAGCPIAATLSEKFSVLLIERGGSPYGDPWITEKRFLGFSLLQTDEFSSISQSFTSKEGVANFRGRVLGGTTAINGGFY SRASEEFVTKSGWDKQLVKESYEWVESKIITKPELTTWQAAVRAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10032346 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	2.2	0.9624
AT5G46970			Plant invertase/pectin methyle...		Lus10019498 [exp]	2.4	0.9523
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	4.5	0.9399
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	6.2	0.9496
AT5G52790			CBS domain-containing protein ...		Lus10039289 [exp]	9.8	0.8844
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	9.9	0.9278
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10017609 [exp]	10.6	0.9276
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	10.7	0.9374
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	11.2	0.9388
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030616 [exp]	12.3	0.9057

Compare expression of checked genes

Lus10032346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.