Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14190 287 / 3e-94 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 287 / 3e-94 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 157 / 1e-43 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 155 / 3e-43 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 155 / 5e-43 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 147 / 3e-40 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 144 / 4e-39 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 136 / 3e-36 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026606 [exp] 471 / 2e-166 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 453 / 8e-159 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 449 / 1e-157 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 425 / 1e-147 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 405 / 9e-140 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012817 [exp] 404 / 2e-139 AT1G14185 545 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 403 / 5e-139 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10024728 [exp] 391 / 3e-136 AT1G14185 391 / 2e-133 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030458 [exp] 383 / 9e-132 AT1G14185 481 / 5e-167 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 352 / 4e-119 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 339 / 4e-114 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 339 / 9e-114 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 149 / 1e-40 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 147 / 4e-40 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 146 / 9e-40 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 144 / 6e-39 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 65 / 1e-11 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 60 / 4e-11 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10032347 pacid=23168638 polypeptide=Lus10032347 locus=Lus10032347.g ID=Lus10032347.BGIv1.0 annot-version=v1.0 ATGGGAAGACATGAGAACATCATAGTTCTGTTGAATGCTACGGTCAAGAGTGTCATATTCAACAACGGAAAATCGGAAAAGACCACTGCTCGAGGCATTC GATTCATAAGCAGTCACGGTACCGGAGATCAAACCTATGAAGCTTACCTTAAGCAACCAGCAAATCGAACTTGTTCGTCCGGAGAGGTGATATTATCAGC AGGAGCATTAGGCAGCCCTCAGATCCTCCTACTGAGCGGCATCGGACCAAAACCCCATCTCAACCGACTCAATATCCCACTCGTCCTCGAGTCAAACCAC GTGGGACTCGAAGTACAAGATAACCCAGGAATTTCCATCTTGGTCGGTTCGAAACCTGGACAGAAGCTCCCAGACCCACCACAAGTAGCAGGGATAACAA AAGGATTCAACTTCATCATCCAAGGGGTCGTCGGACCAGTAAGCTTCAACGCTACAAGGAACAGAATATCAATCAAGCTAGCATTCCCAGAATCGAAAGG GAAGTTGGAACTGAACTCAACCGATCCCAGGATGAACCCTGAAGTTTCATACAAATACCTGGACACTGAGAGAGACATGGATGGATGTGTGGAGATGGTC AAGTTGGCAATGACTGTTGCTAAGTATCTATCTCGGGAGACGAATTTGGTGTCGAATCCTGGTGAGCTGCGGACATACTGCAGGAAGAATGTCGTGAGTT ACTTCCATTACCATGGTGGGTGTGTTGTTGGATCCGTTGTTGATGAAGATTATAGAGTGGTCGGTGTCGATGGTTTAAGAGTTGTGGATGGTTCGACGTT CTTCGAAGCGCCTGGGACGAACCCGATGGCTACTGTCCTGATGCTTGGCAGGTATCAAGGGATCAAGATTCTTGCTAGGAGGAATAAGTGTGAAAAATAA
AA sequence Show only first row Show all	>Lus10032347 pacid=23168638 polypeptide=Lus10032347 locus=Lus10032347.g ID=Lus10032347.BGIv1.0 annot-version=v1.0 MGRHENIIVLLNATVKSVIFNNGKSEKTTARGIRFISSHGTGDQTYEAYLKQPANRTCSSGEVILSAGALGSPQILLLSGIGPKPHLNRLNIPLVLESNH VGLEVQDNPGISILVGSKPGQKLPDPPQVAGITKGFNFIIQGVVGPVSFNATRNRISIKLAFPESKGKLELNSTDPRMNPEVSYKYLDTERDMDGCVEMV KLAMTVAKYLSRETNLVSNPGELRTYCRKNVVSYFHYHGGCVVGSVVDEDYRVVGVDGLRVVDGSTFFEAPGTNPMATVLMLGRYQGIKILARRNKCEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	0	1
AT5G46970			Plant invertase/pectin methyle...		Lus10019498 [exp]	1.0	0.9721
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10032346 [exp]	2.2	0.9624
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	2.4	0.9700
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	2.4	0.9616
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	3.0	0.9685
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025990 [exp]	4.5	0.9502
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	4.9	0.9676
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	6.0	0.9576
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	6.3	0.9605
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	6.6	0.9348

Compare expression of checked genes

Lus10032347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.