Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02210 47 / 8e-06 unknown protein AT5G27260 45 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035759 [exp] 479 / 3e-171 AT5G27260 74 / 6e-15 unknown protein Lus10037335 [exp] 478 / 7e-171 AT5G27260 69 / 7e-13 unknown protein Lus10012077 [exp] 239 / 4e-77 AT5G27260 50 / 5e-07 unknown protein Lus10014160 [exp] 181 / 9e-55 ND 47 / 6e-06 Lus10019607 [exp] 117 / 8e-31 ND / Lus10007175 [exp] 119 / 9e-31 AT5G27260 67 / 2e-12 unknown protein Lus10024751 [exp] 113 / 4e-30 AT1G30140 54 / 4e-09 unknown protein Lus10000529 [exp] 107 / 1e-27 ND 37 / 0.005 Lus10011118 [exp] 91 / 2e-21 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200600 [exp] 54 / 8e-08 AT4G02210 471 / 1e-163 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032348 pacid=23168662 polypeptide=Lus10032348 locus=Lus10032348.g ID=Lus10032348.BGIv1.0 annot-version=v1.0 ATGGCAAAAAAGAGGAAGGATGAGGTTGATGGCGAATCGACGCGAAAGTACTTCAGCTGGACTGACGAGTTAGATAAGGTTCTTATTAAGTGCGTCATCA CTCTGGATGAGAATAATAAGATCGATGCAAAAGGAAAGTTTTGCCCTGACGCTTACAAGGAACTGGAACTAATGATGGAAGAGAAGAAACCAGGTGGCGG AGTGAAGGCCGACCCCAACATCATGTCTAGATGCAAAACCCTCAAGGCAAAAAATTTAGCTGTGCAAGAGTTACGAGGTTTAAGTGGCGCAAGTTGGAAT GATACGCATAAGATGGTTATTATTGAGAACCGGGTGTATGCTGATTACGTTGAGAAACATGGTCGTTGTGCAAAGCTGAATCGGGTTCCTTTTCCATACT ATGATGATTTAGCAGTCGTGTCCAGGAAGGTTCATTCGACTGGTGGAGGGGTTGTTGGGTTGGAAGAATTGGACCAGGCATGTCGTAAGTTTGCGGTACC AAAGAGAATGATTTTGAGTGGGAAGAATTCAGATGACGGGGTTCACGTTGATCAGACAGATACAAGTGAGCAGCATAACGAAGAACATGGTACAGAACAC GAGACGGAAGAAGATAACAGCCTCGATGACCAAACAGAATTTGTCGTACCAGATGAAGAACGCAACCCTCCAACACCCTCTGAGAAGGCCACTCAATCTG AAGCCACTAGCTGCCCAAAGAGGGTTCGTCGATATAGAGATGAATTCGGGAGCGAGATATCTGAGTTGAAGCCAATGATTAAGGAGACAATCGATACGCT TCGGTCAATGTTGGGGGAATCTGATACCATCCACAAGCGGAGGAACATGTTGCACAAAGAGCTTGGAAAAATCAAAGGTCTTACGGAGGATCAGGTGATG GATGGGACGTTAAGCCTTGGAAAGGGCGACAAGATGCTACAGATATTCTTCAACATGGATTCGGATCATGCACGCAAGCACTTCATCCTACGTCTACTTC GTGCAAGTTGA
AA sequence Show only first row Show all	>Lus10032348 pacid=23168662 polypeptide=Lus10032348 locus=Lus10032348.g ID=Lus10032348.BGIv1.0 annot-version=v1.0 MAKKRKDEVDGESTRKYFSWTDELDKVLIKCVITLDENNKIDAKGKFCPDAYKELELMMEEKKPGGGVKADPNIMSRCKTLKAKNLAVQELRGLSGASWN DTHKMVIIENRVYADYVEKHGRCAKLNRVPFPYYDDLAVVSRKVHSTGGGVVGLEELDQACRKFAVPKRMILSGKNSDDGVHVDQTDTSEQHNEEHGTEH ETEEDNSLDDQTEFVVPDEERNPPTPSEKATQSEATSCPKRVRRYRDEFGSEISELKPMIKETIDTLRSMLGESDTIHKRRNMLHKELGKIKGLTEDQVM DGTLSLGKGDKMLQIFFNMDSDHARKHFILRLLRAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27260			unknown protein		Lus10032348 [exp]	0	1
AT2G31600			unknown protein		Lus10027016 [exp]	21.2	0.7664
					Lus10030678 [exp]	33.5	0.7411
					Lus10007187 [exp]	42.3	0.7315
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	42.4	0.7731
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	54.5	0.7788
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	63.0	0.7749
AT1G69550			disease resistance protein (TI...		Lus10038482 [exp]	75.1	0.7731
AT3G09890			Ankyrin repeat family protein ...		Lus10014410 [exp]	99.8	0.7612
AT1G48320			Thioesterase superfamily prote...		Lus10011142 [exp]	117.3	0.7467
AT5G26250			Major facilitator superfamily ...		Lus10005870 [exp]	137.1	0.7196

Compare expression of checked genes

Lus10032348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.