Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11150 340 / 1e-119 TUFF, EMB2448, VHA-E1, TUF embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) AT1G64200 332 / 2e-116 VHA-E3 vacuolar H+-ATPase subunit E isoform 3, vacuolar H+-ATPase subunit E isoform 3 (.1) AT3G08560 282 / 7e-97 VHA-E2 vacuolar H+-ATPase subunit E isoform 2, vacuolar H+-ATPase subunit E isoform 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033934 [exp] 436 / 1e-157 AT4G11150 362 / 3e-128 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Lus10017548 [exp] 325 / 2e-102 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10035604 [exp] 282 / 6e-94 AT1G32070 322 / 8e-109 nuclear shuttle interacting (.1.2.3) Lus10003245 [exp] 280 / 9e-93 AT1G32070 324 / 2e-109 nuclear shuttle interacting (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G029200 [exp] 359 / 2e-127 AT4G11150 351 / 5e-124 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Potri.013G051500 [exp] 351 / 3e-124 AT4G11150 351 / 5e-124 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Potri.016G139800 [exp] 322 / 1e-112 AT1G64200 325 / 1e-113 vacuolar H+-ATPase subunit E isoform 3, vacuolar H+-ATPase subunit E isoform 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [flax] [poplar] ATP_synthase PF01991 [flax] [poplar] vATP-synt_E ATP synthase (E/31 kDa) subunit
Representative CDS sequence Show only first row Show all	>Lus10032349 pacid=23168490 polypeptide=Lus10032349 locus=Lus10032349.g ID=Lus10032349.BGIv1.0 annot-version=v1.0 ATGAATGATGCGGATGTCCCCCAGCAGATCCAACAGATGTGCCGGTTCATCCGGCAAGAGGCTGAAGAGAAGGCCAACGAGATCTCCGTTTCGGCTGAAG AAGAATTCAACATTGAGAAGCTGCAGCTATTAGAAGCCGAAAAGAAGAAGATTAGGCAGGAGTTTGAGCGTAAGGAGAAGCAAGTCGACGTTCGTAAGAA GATTGAGTATTCAATGCAGCTCAATGCCTCTCGGATCAAGGTTCTGCAGGCCCAAGATGATGTGGTCAATTCCATGAAAGAGGTAGCAGCCAAGGATATT CTGAATGTGAGCCGAGATCATCATGCTTACAAAAAGCTTCTGAAGGATCTGATAGTTCAGAGCTTGCTTAGACTGAAGGAACCTGCTGTCTTGCTGCGTT GTCGTAAGGAGGATGCCCATCTGGTAGAATCTGTCGTGGATGCTGCAGCAGAGGAATATTCTGAAAAGGCAAATGTGCACGCACCAGAAATTCTGTTGGA CCACCATATCCATCTTCCACCCGGTCCTAGCCATCATGATCCTCATGCCCTTTCCTGCTCTGGAGGAGTAGTCCTGGCTTCTCGAGATGGGAAGATTGTG TTTGAGAACACACTCGATGCTCGTTTGGATGTCGTCTTCCGTAAGAAGCTCCCTGAGATCCGCAAGCTTCTCTTCAGCCAGGTCGCTGCTGCATGA
AA sequence Show only first row Show all	>Lus10032349 pacid=23168490 polypeptide=Lus10032349 locus=Lus10032349.g ID=Lus10032349.BGIv1.0 annot-version=v1.0 MNDADVPQQIQQMCRFIRQEAEEKANEISVSAEEEFNIEKLQLLEAEKKKIRQEFERKEKQVDVRKKIEYSMQLNASRIKVLQAQDDVVNSMKEVAAKDI LNVSRDHHAYKKLLKDLIVQSLLRLKEPAVLLRCRKEDAHLVESVVDAAAEEYSEKANVHAPEILLDHHIHLPPGPSHHDPHALSCSGGVVLASRDGKIV FENTLDARLDVVFRKKLPEIRKLLFSQVAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	0	1
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	1.0	0.9414
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	2.4	0.8942
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	2.8	0.8924
AT4G14010		RALFL32	ralf-like 32 (.1)		Lus10023223 [exp]	3.0	0.8777
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10037597 [exp]	4.9	0.8855
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10004977 [exp]	5.1	0.9000
AT5G17190			unknown protein		Lus10031957 [exp]	9.6	0.8584
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10030884 [exp]	12.2	0.8773
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	13.0	0.8610
AT4G05460			RNI-like superfamily protein (...		Lus10023277 [exp]	13.9	0.8495

Compare expression of checked genes

Lus10032349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.