Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23740 741 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 560 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT1G64210 558 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 525 / 1e-180 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 500 / 8e-171 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 500 / 2e-170 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 489 / 3e-166 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G02880 387 / 2e-126 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 373 / 9e-121 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 372 / 2e-120 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033936 [exp] 1069 / 0 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 632 / 0 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 631 / 0 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014943 [exp] 606 / 0 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 587 / 0 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 568 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 566 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 564 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 560 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G136100 [exp] 854 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 838 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 694 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 686 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 574 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 563 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 549 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 538 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 525 / 7e-180 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 414 / 1e-136 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032351 pacid=23168520 polypeptide=Lus10032351 locus=Lus10032351.g ID=Lus10032351.BGIv1.0 annot-version=v1.0 ATGGAAGCTAAGCTTCTTGTTAATGTTCTCTCTTGCGGTTTTCTCTTCTTCGTGAGCGTTGTTCTTCTTCACGGAGTAAAAGGAGAGCCAGTTGAAGAAG ATAAGCAAGCTTTGCTGGATTTCATGGCCAAATTCCATCACTCGAGAGCACTGAACTGGAATGAGAGCTCCTCAGTTTGCAGCAACTGGACTGGAATTAC TTGCAGCCAAGATGGTTCAAGAGTGATTGGAGTTAGGTTACCTGGTGTTGGATTCCAAGGCCCTATTCCGCCAAACACTCTCAGCCGTCTCTCAGCATTG CAGGTTCTAAGCCTTAGATCCAATGGAATCAGTGGGAACTTCCCTTCTGAATTGTCAACTTTAAAGAACCTGTCTTTCCTCTATTTGCAATTCAACAACC TGTCCGGAGCTTTACCAGCTGATTTCCCTGTTTGGAACAACCTCACCATTGTCAATTTGTCCAACAACAGGTTCAATGGTAGTATCCCTCGCTCGCTTTC GCAATTGAACCGGCTTGCTGTTTTGAATCTTGCAAACAATTCCTTATCTGGTGAAATCCCTGACCTTAGTATGCAAAGTTTGCAGCAGATCAACTTGTCC AACAATGACCTCTCTGGTAGCATCCCTAGTTCCCTTACTAGATTCCCAAATTCAGTCTTTGCTGGTAACAATGTTTCACTTGGAGGTCATTCGAATCTTC CAGCTTTCAACCCTCCTTTGCGAGACTCTCGTAAAGGACTTAGTGAAGCAGCATTGTTAGGGATCATAGCAGCAGCATGTGTTGTAGGATTGGTAGGTTT GGCTTTCTTGCTCATTGTTTGTTGCTCAAGGAAGAAAAGACTGGACGAGTTTTCCCTCTCCGGGAAGTTGCAGAAGGGAGGGATGTCTCCGGAGAAAATG GTGTCGAGAAATCAAGATGCTAGTAACAAGTTGGTGTTCTTTGATGGATGTAACTATGCATTTGATCTGGAGGATCTGTTAAGGGCTTCTGCTGAGGTTT TGGGGAAAGGGACATTTGGTATGGCTTATAAGGCCATCCTGGAAGACACTACAACAGTAGTGGTTAAGAGGCTGAAAGAAGTGAGCGCTGGGAAGCGCGA TTTCGAACAGCAGATGGAAATCATTGGAGGCATTAGGCACGAGAATGTGGTCGACTTGAAGGCTTATTACTACTCCAAGGACGAGAAGCTGATGGTTTGC AATTATTTCAGCCGCGGAAGTGTCTCCGCCATGCTTCATGCGAAAAGAGGATCGGAGCGAATGCCACTAGACTGGGACACGAGGATGCAGATCGCGATAG GTGCAGCTCGAGGCATATCCCGAATCCACCAAGCAAACAGCGGGAAGTTTGTCCACGGAAACATCAAATCCTCAAACATATTCCTCAACTCAAACAACTA CGGCTGCATCTCCGACGTCGGGCTCTCAACCGTGATGAGCCAGCTCGCTCCACCAATCTCCCGTGCAGCTGGCTACCGAGCACCGGAGGTTACAGACACT AGAAAAGCCACGCAGCCTTCGGATATCTACAGCTTCGGAGTGGTCCTGCTCGAGCTCCTCACAGGGAAATCCCCCATCCACACCACGGGTGGGGACGAGA TCATCCACTTGGTGAGGTGGGTTCATTCCGTGGTCAGAGAGGAGTGGACTGCCGAAGTGTTTGATGTCGAGCTGCTTAGGTATCCGAACATCGAAGAAGA GATGGTCGAGATGCTGCAGATCGCAATGTCTTGCGTGGTGAGGGTTCCTGACCAGCGGCCTAAGATGGCCGAGGTTGTGAAAGTGATCGAGAGCGTTCGG CAGGGAGGCGTTATCGAGAATCGGACATCTACGGGAACTTCAACTCCGCAGCATACATCATCAACACCAGTGCCAACTGTCGAATCGTCGTGA
AA sequence Show only first row Show all	>Lus10032351 pacid=23168520 polypeptide=Lus10032351 locus=Lus10032351.g ID=Lus10032351.BGIv1.0 annot-version=v1.0 MEAKLLVNVLSCGFLFFVSVVLLHGVKGEPVEEDKQALLDFMAKFHHSRALNWNESSSVCSNWTGITCSQDGSRVIGVRLPGVGFQGPIPPNTLSRLSAL QVLSLRSNGISGNFPSELSTLKNLSFLYLQFNNLSGALPADFPVWNNLTIVNLSNNRFNGSIPRSLSQLNRLAVLNLANNSLSGEIPDLSMQSLQQINLS NNDLSGSIPSSLTRFPNSVFAGNNVSLGGHSNLPAFNPPLRDSRKGLSEAALLGIIAAACVVGLVGLAFLLIVCCSRKKRLDEFSLSGKLQKGGMSPEKM VSRNQDASNKLVFFDGCNYAFDLEDLLRASAEVLGKGTFGMAYKAILEDTTTVVVKRLKEVSAGKRDFEQQMEIIGGIRHENVVDLKAYYYSKDEKLMVC NYFSRGSVSAMLHAKRGSERMPLDWDTRMQIAIGAARGISRIHQANSGKFVHGNIKSSNIFLNSNNYGCISDVGLSTVMSQLAPPISRAAGYRAPEVTDT RKATQPSDIYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIAMSCVVRVPDQRPKMAEVVKVIESVR QGGVIENRTSTGTSTPQHTSSTPVPTVESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	0	1
AT2G40070			unknown protein		Lus10030402 [exp]	1.0	0.9234
AT4G23740			Leucine-rich repeat protein ki...		Lus10033936 [exp]	2.0	0.9122
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	2.8	0.8886
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	3.5	0.9015
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	5.3	0.8902
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10022561 [exp]	6.3	0.8795
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	6.6	0.8776
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	6.9	0.8620
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	7.2	0.8754
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	7.5	0.8705

Compare expression of checked genes

Lus10032351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.