Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53300 302 / 2e-107 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT4G27960 301 / 5e-107 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 298 / 6e-106 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT3G08690 296 / 3e-105 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G41700 296 / 6e-105 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G56150 280 / 1e-98 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT2G16740 276 / 2e-97 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT3G08700 251 / 3e-87 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT3G13550 164 / 1e-52 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT1G16890 152 / 6e-48 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033937 [exp] 305 / 1e-108 AT5G53300 300 / 2e-106 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10014942 [exp] 303 / 1e-107 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 303 / 1e-107 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 303 / 1e-107 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 303 / 1e-107 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 295 / 9e-105 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 295 / 9e-105 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10021385 [exp] 292 / 1e-103 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027846 [exp] 288 / 7e-102 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033000 [exp] 306 / 5e-109 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.015G023300 [exp] 306 / 5e-109 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G094900 [exp] 304 / 3e-108 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.003G136200 [exp] 302 / 2e-107 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 300 / 8e-107 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.006G110200 [exp] 300 / 1e-106 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 298 / 5e-106 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G471200 [exp] 293 / 1e-103 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.011G168200 [exp] 291 / 2e-103 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.004G175000 [exp] 290 / 2e-102 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10032352 pacid=23168511 polypeptide=Lus10032352 locus=Lus10032352.g ID=Lus10032352.BGIv1.0 annot-version=v1.0 ATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAGGATCTCCAGAAAGACCCTCCTACCTCTTGCAGCGCAGGTCCTGTCGCTGAAGACATGTTCCATTGGC AAGCAACGATTATGGGCCCTCCTGATAGCCCATATGCCGGTGGAGTGTTTCTAGTCAGTATTCACTTCCCACCAGACTATCCATTCAAGCCACCAAAGGT TGCTTTCAGGACAAAGGTATTCCACCCCAATATCAACAGCAACGGTAGCATCTGCCTGGATATTCTCAAAGAGCAGTGGAGCCCGGCTTTAACCATCTCG AAGGTGTTGCTGTCCATTTGCTCCCTGTTGACGGACCCCAACCCCGACGACCCATTGGTCCCGGAGATTGCCCACATGTACAAGACCGATAAGAACAAGT ACGAAACAACTGCGAGGAGCTGGACTCAGAAGTACGCCATGGGTTAA
AA sequence Show only first row Show all	>Lus10032352 pacid=23168511 polypeptide=Lus10032352 locus=Lus10032352.g ID=Lus10032352.BGIv1.0 annot-version=v1.0 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS KVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYETTARSWTQKYAMG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	0	1
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	1.0	0.8913
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10024441 [exp]	4.1	0.8314
AT3G08910			DNAJ heat shock family protein...		Lus10005033 [exp]	4.6	0.8642
AT5G43060			Granulin repeat cysteine prote...		Lus10014087 [exp]	6.3	0.8793
AT5G63480			unknown protein		Lus10037639 [exp]	7.3	0.7972
AT1G03910			unknown protein		Lus10027605 [exp]	10.6	0.8367
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	11.1	0.8597
AT1G61730	GeBP		DNA-binding storekeeper protei...		Lus10010076 [exp]	13.9	0.8447
AT3G08910			DNAJ heat shock family protein...		Lus10027803 [exp]	14.1	0.8592
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	17.3	0.7858

Compare expression of checked genes

Lus10032352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.