Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53250 59 / 2e-12 AGP22, ATAGP22 arabinogalactan protein 22 (.1) AT3G61640 59 / 2e-12 AGP20, ATAGP20 arabinogalactan protein 20 (.1) AT2G46330 58 / 3e-12 ATAGP16, AGP16 arabinogalactan protein 16 (.1.2) AT5G24105 44 / 1e-06 AGP41 arabinogalactan protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033939 [exp] 133 / 1e-40 AT3G61640 61 / 4e-13 arabinogalactan protein 20 (.1) Lus10000542 [exp] 42 / 7e-06 AT2G46330 63 / 6e-15 arabinogalactan protein 16 (.1.2) Lus10024263 [exp] 37 / 0.0004 AT2G46330 51 / 2e-10 arabinogalactan protein 16 (.1.2) Lus10023629 [exp] 37 / 0.0004 AT2G46330 51 / 2e-10 arabinogalactan protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022600 [exp] 55 / 6e-11 AT5G53250 70 / 4e-18 arabinogalactan protein 22 (.1) Potri.012G032000 [exp] 45 / 3e-07 AT3G61640 66 / 3e-16 arabinogalactan protein 20 (.1) Potri.014G094800 [exp] 45 / 3e-07 AT3G61640 42 / 1e-06 arabinogalactan protein 20 (.1) Potri.018G078801 [exp] 42 / 5e-06 ND / Potri.003G136600 [exp] 41 / 2e-05 AT5G53250 55 / 7e-12 arabinogalactan protein 22 (.1) Potri.001G094700 [exp] 40 / 2e-05 AT2G46330 57 / 7e-13 arabinogalactan protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06376 [flax] [poplar] AGP Arabinogalactan peptide
Representative CDS sequence Show only first row Show all	>Lus10032355 pacid=23168572 polypeptide=Lus10032355 locus=Lus10032355.g ID=Lus10032355.BGIv1.0 annot-version=v1.0 ATGGCAGTTTCAAGAATGGGCGTGGGAGCTGTTGCCGTCTTCCTAATCTTCGCCATTGCCTTGCCTGCTGCAGTTCAGGCCCAGATCATGGCTCCAGCTC CTGCACCCACCAGCGATGGGACGTCGATTGACCAAGGAATTGCGTATGTGTTGATGCTGTTGGCTTTGGAATGTGGTGGTGGGATGGATGTTGTGGCTGA TGTTAATGATATCAATCTTGTTTGGTGGCTCATCTTTTCTCTACCTTATCAAAATTCGTATAGTGTTACATTAGGGCACGGTTTGGTTTCGCAGGTAAGT AGTTGGATGAAATCTTTCATTCCGATTGTTAAAATACCAGTGCTCAAGAAGGCGCTAGGTGTAGAACGGGCGTTGGAGCCTTACCTAGCGCCTAGCTCGA TGCTTAGGAGGTAG
AA sequence Show only first row Show all	>Lus10032355 pacid=23168572 polypeptide=Lus10032355 locus=Lus10032355.g ID=Lus10032355.BGIv1.0 annot-version=v1.0 MAVSRMGVGAVAVFLIFAIALPAAVQAQIMAPAPAPTSDGTSIDQGIAYVLMLLALECGGGMDVVADVNDINLVWWLIFSLPYQNSYSVTLGHGLVSQVS SWMKSFIPIVKIPVLKKALGVERALEPYLAPSSMLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10032355 [exp]	0	1
AT2G04220			Plant protein of unknown funct...		Lus10019467 [exp]	1.4	0.9938
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	3.0	0.9930
AT2G04220			Plant protein of unknown funct...		Lus10043317 [exp]	10.2	0.9950
AT1G72490			unknown protein		Lus10037689 [exp]	11.3	0.9856
					Lus10042799 [exp]	15.4	0.9871
AT3G03200	NAC	ANAC045	NAC domain containing protein ...		Lus10033650 [exp]	18.4	0.9679
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10039979 [exp]	21.0	0.9385
AT4G34215			Domain of unknown function (DU...		Lus10001128 [exp]	22.0	0.9714
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	22.4	0.9918
AT4G34810			SAUR-like auxin-responsive pro...		Lus10012184 [exp]	22.5	0.9860

Compare expression of checked genes

Lus10032355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.