Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64300 581 / 0 Protein kinase family protein (.1.2) AT5G41730 556 / 0 Protein kinase family protein (.1) AT1G01450 409 / 9e-138 Protein kinase superfamily protein (.1) AT3G46930 107 / 2e-24 Protein kinase superfamily protein (.1) AT5G58950 105 / 9e-24 Protein kinase superfamily protein (.1) AT1G62400 102 / 1e-23 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 99 / 7e-22 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 98 / 1e-21 Protein kinase superfamily protein (.1) AT5G57610 99 / 2e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G01850 94 / 6e-21 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033941 [exp] 1172 / 0 AT1G64300 796 / 0.0 Protein kinase family protein (.1.2) Lus10036439 [exp] 408 / 3e-134 AT1G64300 599 / 0.0 Protein kinase family protein (.1.2) Lus10041114 [exp] 405 / 3e-133 AT1G64300 600 / 0.0 Protein kinase family protein (.1.2) Lus10041113 [exp] 168 / 1e-47 AT1G01450 187 / 8e-56 Protein kinase superfamily protein (.1) Lus10023989 [exp] 112 / 8e-26 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 110 / 1e-24 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10022653 [exp] 105 / 1e-23 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10001315 [exp] 104 / 3e-23 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 104 / 4e-23 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137000 [exp] 702 / 0 AT1G64300 781 / 0.0 Protein kinase family protein (.1.2) Potri.014G095200 [exp] 540 / 0 AT1G64300 749 / 0.0 Protein kinase family protein (.1.2) Potri.007G060600 [exp] 116 / 3e-27 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 109 / 2e-25 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 109 / 4e-25 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 109 / 5e-25 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 108 / 5e-25 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 108 / 1e-24 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.006G279900 [exp] 106 / 1e-24 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 104 / 8e-24 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF06760 [flax] [poplar] DUF1221 Protein of unknown function (DUF1221)
Representative CDS sequence Show only first row Show all	>Lus10032357 pacid=23168646 polypeptide=Lus10032357 locus=Lus10032357.g ID=Lus10032357.BGIv1.0 annot-version=v1.0 ATGAAGAGGAAGAGGGTGATGCTGTCGAAGAAGTACGATAGGAGCTGGTACGATCCGAAGCTGTTCCAATGGAGGTTCGGGAGGCAGTATTTGATTCCAA GGGAGATTTGCTGTCAGTTCAAGGCTGCTGTGAGGGAGGATAAATGGCACTTGATTGAGAAGTTGAAGGAGAAGAAAGCTTCGGGGTTGGTCTCGAAGAA CGAGCATCGACTAGTGGATTTGCTCTTGAAGAAGCTTAACTCTACTGAGAGGGTTAACGGGAAGTTACCTCCGAGTTCGATCTTGTTTGGAGGGGAGGAT TATAAAGTGAGGAGGAGGCTAGGGGAAGGAAGCCAGTACAAAGAGATTCAATGGCTAGGAGAGGTATATGCAATGAGGCATTTGTTTCATGAGATTGAGC CGTTGAGTTCCGAGATTTACGACTTGATGTCGCTTGCTCATCCCAACATTGTTCAGTACTACTGCGGATTCTACGACGAGGATAAAAAGGAGTGTTTCCT TGTGATGGAGTTGATGAGCAAGGATCTGTATTCTTACCTGAAGGAGAACAGCAGTCCAAGGAAAAGGATTCTTTTGCCTCTCCCTATTGTTGTGGATATC ATGCTTCAGGTTGCTAGAGGAATGGAGTTTCTCCATTCCAGGAAGATATACCATGGGGATTTGAACATCACTAACATCTTTCTGAAACCAAGGAAATCCA CAGAAGGCTACTTCTCGGTTAAAGTTTCTGGATTTGGTCTGACAAGAGTTGAAAACCAACCTCTGAAGCATGCTTCTCCGAACCCGGATCCAATCGATCC GACTATTTGGTATGCACCTGAAGTTCTGGCAGAACAAGAGAAAGGAGGAAACTTGGCGTGTAAGTACACGGAAAAGGCAGATGTTTACAGCTTCGGAATG TTGAGTTTCGGGCTCTTAACTGGTAAGCTTCCTTTCGAGGACGGGCATCTACATGGAGATCAAATGATCAAGAACATTAGAGCTGGAGAAAGACCATTGT TTCCTTACCTATCACCTAAGTACCTAGTGAATTTGACCAAGAAGTGCTGGCATACGGATCCAAACTCTCGTCCTAGCTTCACCTCCATTTGCAGGATTCT TCGATACGTAAAGAAGTTCCTGATCATGAATCAAAGCGATGGCCAGCCGGATATGCACTTGCCACCTGTCGACTACACCGACCTTGAATCAGGATTCCTG AAGATGTTCCCTGCAGACACAACCTGTGATTCGAGCTCGGTTTCTCAGATTCCATTTCACATGTTTGCTTACAGACTGGTTGAGAGAGAAAAGACATCAT TAGGTGTCAAGTTCAAGCAAAGTGAGCCACCCAGTGAGGCAGTTCCTAATGGTCACGACGAGCCACATCATATCCTTCCAGCTGAGGATCCAGCTGAAGA GTCCAGAATCGTTCTCTTCGATGCGAAGTCAGTTCGTGTGGCGAGTCCTGAGAAGCAATTCCCATCAGATACGAGGTCAGTTATTTCGGAGCCACCTAAC AAAAATGCAAGTCCTGTCAGGAAGAAGCCAGCCAACGTTAAGGGTCTACTGATGCTTGCAGTAATTGAAGCAGCAAAACCAAAGCTGAAAACGCCAGTAA GGTCACCAGCACCAGTAAGATTATCAGCAACTTGTAGCCCCACTGGCCGCAATTCGAGGACGAACACCAAAGTCAGTCCTAAAAGAACAACACCATCAAT GGGTTCCCAGAATCCAGGGAAAGGGATATTATATAGACAAAGCTCTCCATAG
AA sequence Show only first row Show all	>Lus10032357 pacid=23168646 polypeptide=Lus10032357 locus=Lus10032357.g ID=Lus10032357.BGIv1.0 annot-version=v1.0 MKRKRVMLSKKYDRSWYDPKLFQWRFGRQYLIPREICCQFKAAVREDKWHLIEKLKEKKASGLVSKNEHRLVDLLLKKLNSTERVNGKLPPSSILFGGED YKVRRRLGEGSQYKEIQWLGEVYAMRHLFHEIEPLSSEIYDLMSLAHPNIVQYYCGFYDEDKKECFLVMELMSKDLYSYLKENSSPRKRILLPLPIVVDI MLQVARGMEFLHSRKIYHGDLNITNIFLKPRKSTEGYFSVKVSGFGLTRVENQPLKHASPNPDPIDPTIWYAPEVLAEQEKGGNLACKYTEKADVYSFGM LSFGLLTGKLPFEDGHLHGDQMIKNIRAGERPLFPYLSPKYLVNLTKKCWHTDPNSRPSFTSICRILRYVKKFLIMNQSDGQPDMHLPPVDYTDLESGFL KMFPADTTCDSSSVSQIPFHMFAYRLVEREKTSLGVKFKQSEPPSEAVPNGHDEPHHILPAEDPAEESRIVLFDAKSVRVASPEKQFPSDTRSVISEPPN KNASPVRKKPANVKGLLMLAVIEAAKPKLKTPVRSPAPVRLSATCSPTGRNSRTNTKVSPKRTTPSMGSQNPGKGILYRQSSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64300			Protein kinase family protein ...		Lus10032357 [exp]	0	1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017487 [exp]	9.5	0.8874
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	9.8	0.8895
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	11.8	0.8968
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	18.1	0.8579
AT1G77220			Protein of unknown function (D...		Lus10028621 [exp]	21.2	0.8292
					Lus10007598 [exp]	21.8	0.8411
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	21.9	0.8525
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10018865 [exp]	21.9	0.8389
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	25.3	0.8596
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10001862 [exp]	28.2	0.8275

Compare expression of checked genes

Lus10032357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.