Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11110 776 / 0 SPA2 SPA1-related 2 (.1) AT2G46340 633 / 0 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT3G15354 406 / 3e-127 SPA3 SPA1-related 3 (.1) AT1G53090 378 / 6e-117 SPA4 SPA1-related 4 (.1.2) AT2G32950 221 / 5e-61 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23730 87 / 5e-18 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 73 / 3e-13 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 49 / 1e-05 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 48 / 3e-05 MAC3B MOS4-associated complex 3B (.1.2.3) AT3G63460 47 / 6e-05 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033942 [exp] 1127 / 0 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10035332 [exp] 227 / 4e-63 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 227 / 4e-63 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10019476 [exp] 206 / 2e-56 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10043323 [exp] 206 / 3e-55 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019475 [exp] 205 / 1e-54 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10005742 [exp] 96 / 3e-21 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027454 [exp] 90 / 2e-19 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014896 [exp] 44 / 0.0004 AT3G59410 517 / 2e-173 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094500 [exp] 1109 / 0 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.003G137100 [exp] 1073 / 0 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G095300 [exp] 647 / 0 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.001G399600 [exp] 422 / 1e-132 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.011G119500 [exp] 412 / 7e-129 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.004G002700 [exp] 229 / 2e-64 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G159300 [exp] 226 / 9e-63 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 219 / 5e-62 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 88 / 3e-18 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G140200 [exp] 88 / 5e-18 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032358 pacid=23168542 polypeptide=Lus10032358 locus=Lus10032358.g ID=Lus10032358.BGIv1.0 annot-version=v1.0 ATGGATGGAGGTCTGGGGAATGAGGTGGCTCCGGGTGATGTGGTGGATGATGAGGTGCATTTCCGTGGTAAAGAGGCCGAGTTCTCCTTGTCATTGAGAC AGCCTGAACCTTCCAATGTGGTGGAGTGTTCCGATGAGGCAGCTGTTCGTAGTGATGGTGAGTATTTGGACAGTTCGTTTGACGTGATTTCAGGGATATT GGAAGGCAGGACTGGAAATGGAAGTGTTGGGGATGGTTCCGGGGCTCGATTTTCTGGTGATGGGGGAAACATGGTGGAGGAGTTGCTGGTTAAGAAGAAT TATGATGGTTCTAACTTGCCTATAGTTGGGATGTCTAACCATAGGGAGAAGTTGGAGTCGAGGTGGACTCAATGGCAGCCTCATTATCAACTTGGAGTGG GGTCAGGGAGTGGAAGCTCTCGGAGTAACGTTTGGCACATGGATGATGGTCAGACGGCGAGTCCTTGTGAGAATAACAATGCGCAGAATGTTTCTTCTTC TGAGTTTATGGGTCAGGGGGCGGCATCCAATGATTTGTCTAATGAGGCTGTGGGGCAGTTGGTGGATACGGAACATATGGAGGCTGCTGACATGGTTTCT CGTGGTGGGATTCGGACAAAGATTCTGTCGAAATCAGGTTTTGCTGATTTCTTTATAAAAAATACTCTGAAAGGGAAGGGGACTGTTTTTAGAGGCCATC CCCACAATGTTGTGAGACATGAACCCATGGTCCAGGAAAATGGAAGGACTCCGAATGTCATGGCGACGAGTTGTGGTAGTGTCTCAACGAGTGTGGGTGA GAAAACAGTAATGCCTTCAGCCTCAGGTGTCGCCAGGCCAAGGCATGGTGGTGTTGATCATGATGGAGTCAGTTTGAGAGAATGGCTAAATGTCGGGCGT CATGTGGTAGACAAAGTGGAATGCTTTCATATATTTAGGCGGATTGTGGATCTGGTTGATAGCTTCCATTCTAAAGGAGCTGTCTTGTCTGAGTTAAGGC CGTCTTGCTTCAAGTTGTTGCCGTCGAAGCAGGTAAGATACCTTGGATCAGCTGATAAAAGAGATGATCTAGGAAGTACTCTTGATCAAGATGTGCCTTG CTTAGGGAATCATGCTAGTAAGAAGAGGATGATAGACCAAGGATTGTTTTCATCATCTCCTGGTTTACACATGAAGAAACAAAAACTAAGTGAGAACATG AATGCTGCTAAGAGGTGGCCTCAGTTTAGTGTGAAATATGGCTCCAAACTTAAAACTGGAGAAGCTGACTTCGGAATTGGACAGCAATTCCTTAATGATT CTACTGGTGGCAATCCAAATATGGGACATGGAGCTCAGAGCAATCTTAGTTTTCCTAGGTTCTCAAAGGCAGTGCAACAACAACTATCAACCTGTGGTAC GGACCCGGTGGAAGAAAAGTGGTATGCAAGTCCCGAGGAGCTGACTGAAGGAATCCACACGATGTCATCGAATGTTTATGCTTTGGGAGTACTGCTGTTT GAGTTGCTCAGTCACTTCGACTCCGAAAGAGCACGTGCTACTGCTATGTCAGACTTGTGTAACAGGATTCTTCCTCCTCATTTTTTGTCTGAGAATCTGA AGGAAGCTGGGTTTTGTCTTTTGCTACTTCATCCTGAGCCTTCCTCGCGTCTGACAACAAGGGAGATTCTGCAATCTGACGTGATTAATGGATTGCCAGA CATGTCTGTGGAAGAATTGTCATCTGCCATCGAAAAAGATGACGCCGAGTCAGAATTATTATCATATTTTCTTGTTTCACTGAAAGCTCACAAGCAGAGT ACTGCTTCCAAGTTAATGAACGACATTAAGTGCCTAGAAGCAGATATTAAGGAGGTTGAGAGGAGGAATTACTCAAACAAATCACAGATACAGGCTTGCA CAGGCAGTGACTTCCATAGTGCAAAGGAACACTCTTTCCAGCAAAATGATGCAACTGCTGAAGGAGTTTCTCCGAAGTTGTCTAATCTCAATACGAAAGA GATGAGGTTGATGAGAAATATCAGTCAGCTTGAAAGTGCTTATTTCTCCATGAGGGGAAAAGTCCAAGTTGCTGAGGCTAACCCTACTGCACGCCAAGAC AAGTATTTATTGCGAAATCGTGAAATTTGGCAATCAGAAGAAGAAGCTGAAGGAAATTATAATTCAGCTGATTGCCTCGGTGAATTCTTTGATGGCTTGT GCAAATATGCTCGGTATAGTAAGTTTCAAGTACGCGGGTCATTGAGAACTGGGGAGTTTAACAATTCTGCCAATGTGATTTGCTCTCTTAGTTTTGACCG GGACAAGGACTATTTCGCTGCTGCTGGAGTTTCAAAAAAAATAAAGATATATGATTTTGGTTCCCTCTTTAATGATTCTGTTGATATTCATTATCCGGCT GTTGAAATGTCTAACAAATCAAAGCTCAGCTGCATTTGTTGGAACACCTATATCAAGAATTATCTGGCTTCAACAGATTACGATGGTGTAGTAAAGAAAA ATAGTTTAGCCACAATCAGGAACATCGCCAACGTCTGCTGTGTTCAGTTCTCTTCTCACTCGACTCATTTACTGGCTTTTGGATCTGCGGATTTCAGAAC CTACTGCTTTGATACTCGACATGTTAGAATACCGTGGTGTACATTAAGTGGCCACGAGAGAGCAGTTAGCTACGTAAAATTTGTGGACGCTGACACTATT GTTACTGCATCGACTGACAACTCACTCAAGCTATGGGATCTTAAAAAGACCAATGGCAGTGGCCTGTCCATGGATGCTTGCAGCTCAACTCTTCGGGGGC ACACCAACGAAAAGGTTTATGCTTACCACAGATCTGTACCGATGCCGATGGCATCTCACAAGTTTGGTTCCGAGGATCCTATTTCAGGCAAAGAGACTGA GGATGACAACGGGCAATTTGTTTCAAGTGTCTGCTGGAAGGGGAACTCGGATATGCTCCTAGCTGCCAATTCAAGCGGCTGCATAAAAGTACTGCAGATG GTGTAA
AA sequence Show only first row Show all	>Lus10032358 pacid=23168542 polypeptide=Lus10032358 locus=Lus10032358.g ID=Lus10032358.BGIv1.0 annot-version=v1.0 MDGGLGNEVAPGDVVDDEVHFRGKEAEFSLSLRQPEPSNVVECSDEAAVRSDGEYLDSSFDVISGILEGRTGNGSVGDGSGARFSGDGGNMVEELLVKKN YDGSNLPIVGMSNHREKLESRWTQWQPHYQLGVGSGSGSSRSNVWHMDDGQTASPCENNNAQNVSSSEFMGQGAASNDLSNEAVGQLVDTEHMEAADMVS RGGIRTKILSKSGFADFFIKNTLKGKGTVFRGHPHNVVRHEPMVQENGRTPNVMATSCGSVSTSVGEKTVMPSASGVARPRHGGVDHDGVSLREWLNVGR HVVDKVECFHIFRRIVDLVDSFHSKGAVLSELRPSCFKLLPSKQVRYLGSADKRDDLGSTLDQDVPCLGNHASKKRMIDQGLFSSSPGLHMKKQKLSENM NAAKRWPQFSVKYGSKLKTGEADFGIGQQFLNDSTGGNPNMGHGAQSNLSFPRFSKAVQQQLSTCGTDPVEEKWYASPEELTEGIHTMSSNVYALGVLLF ELLSHFDSERARATAMSDLCNRILPPHFLSENLKEAGFCLLLLHPEPSSRLTTREILQSDVINGLPDMSVEELSSAIEKDDAESELLSYFLVSLKAHKQS TASKLMNDIKCLEADIKEVERRNYSNKSQIQACTGSDFHSAKEHSFQQNDATAEGVSPKLSNLNTKEMRLMRNISQLESAYFSMRGKVQVAEANPTARQD KYLLRNREIWQSEEEAEGNYNSADCLGEFFDGLCKYARYSKFQVRGSLRTGEFNNSANVICSLSFDRDKDYFAAAGVSKKIKIYDFGSLFNDSVDIHYPA VEMSNKSKLSCICWNTYIKNYLASTDYDGVVKKNSLATIRNIANVCCVQFSSHSTHLLAFGSADFRTYCFDTRHVRIPWCTLSGHERAVSYVKFVDADTI VTASTDNSLKLWDLKKTNGSGLSMDACSSTLRGHTNEKVYAYHRSVPMPMASHKFGSEDPISGKETEDDNGQFVSSVCWKGNSDMLLAANSSGCIKVLQM V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10032358 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	1.0	0.9199
AT1G30470			SIT4 phosphatase-associated fa...		Lus10023354 [exp]	2.4	0.9066
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	2.8	0.8584
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10000135 [exp]	3.0	0.8596
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	5.7	0.8451
AT3G12010			unknown protein		Lus10017227 [exp]	5.9	0.8558
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	8.1	0.8238
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	9.5	0.8467
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	13.0	0.8359
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	17.4	0.8309

Compare expression of checked genes

Lus10032358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.