Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64320 140 / 9e-36 myosin heavy chain-related (.1) AT5G41780 112 / 5e-26 myosin heavy chain-related (.1) AT5G41790 70 / 3e-12 CIP1 COP1-interactive protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033944 [exp] 1016 / 0 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1) Lus10033945 [exp] 96 / 4e-20 AT5G41790 309 / 8e-86 COP1-interactive protein 1 (.1) Lus10032362 [exp] 82 / 4e-16 AT5G41790 275 / 7e-79 COP1-interactive protein 1 (.1) Lus10032361 [exp] 44 / 0.0005 AT5G41790 234 / 1e-65 COP1-interactive protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137300 [exp] 211 / 6e-59 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.003G137400 [exp] 99 / 3e-21 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.001G094200 [exp] 89 / 4e-18 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1) Potri.001G094332 [exp] 59 / 4e-10 AT1G64320 63 / 4e-12 myosin heavy chain-related (.1) Potri.001G094266 [exp] 47 / 6e-06 AT1G64320 65 / 1e-12 myosin heavy chain-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032360 pacid=23168569 polypeptide=Lus10032360 locus=Lus10032360.g ID=Lus10032360.BGIv1.0 annot-version=v1.0 ATGGGTGAAACACAACAAGAAAATGATGAAAAGGAGCATGTAAATCTTGAAGTTCCATCAACAATGGTGAAGGTTGATGGAGATAGTCATGGTAGTAGAG GAGTTGTTGAGGTAAAAGAGTTAGAAGGACAACTAATTGCCAATAAGTTTGAGATGGAGTCTTTGAGGAAGGAGAAAAGAGAGATGGAATTGTTGCTTGA AAGGAAAGTAAGCGAGGTTAACGAGTTACAATCTCAACTCATAGAAATTAAATCTCAATGCTCTGCGAGAGAAGTAGAAGAAGAAGAAAAAGAAGATGAC AATAAAGAGGTTGCTTCGATCTCGAAAAGTATGAAGGACAACGAAGAAAAATACACTTCTCGAATCGAAGATCTCGTAACAGAAGTGACCAGTCTGCAGA CGGAGGTGGCTTCATTACACAACATGAAGCAAGACATCGAGTTGAAACTTGACGAGAAAGTAACCGAAGTAACAGAGTGTGGGGAGAGAAACTTACAACT CAGCGCCCGTATTTCAGAGGTCGAACACATTCTGGAGACGAAAGTGGACGAAAAGGACTCCATTTTAAAGGAAATGAGAGACAATGGAGAGGGAATGAGG TCTAGAATTGAAAACCTAATAGCAAAAGTTGCAACCCTAGAAACAGAGGTGGAGTATGCAACAAGCAAGAAGAAAGATATAGAAGCACAAATGGAAGTAG AGGTAGCAGAAGCCAAAGAACTCAAGGACATCAACGAGGAGCTGCATGTTCAAATTTTGGATCTCGAGTCGACATTGAAGGAGACATCGAGACTCGTGAG GAAACTCAAGAACAACGAGAGCAAGTTGACAGGGAGAATAGCAGAGTTGACCGGGCAGGTCACTCAAATGAGCGACAGAACATTTGAACTCGAACAGTTG CTATCAGATCGAGAGGGTCAGGTTATCAGCAAAGTAGCATCAATGGAGATTACAAACTTGAAAGAACAAATAACCCGCCTACAACAAGAGTTAGACTCTT CATCTTCCAATGTGAGTACTGAAAAGCCACATCAAATTATAACGACGTTGAAAGAACCAGATAATCAGGAAAGTAGTGGTAGTCAATTAGAGACTACACT TCAACCAATTAGGCACCTTTCGATGGAATCTCCAAAGGTGAAGATGATGGAGTCGAACAAAACACTTGAGAGGAAGATGGAAGAGTTGGCAGAACAGTAC CAAATGAGAATGGAGAACCACATTCGTTTGTTGAGACAACGAGTCAAAGTCGCTGAACAGATACACAACGAAACCAAGGACCACTACAAGGAGATCAAGG AAGAGCTGGTGCAAGAGAACAAGGAGCTTCATGATAAAGTCGTGGAATTCGAGGATGCGTTGAAGAGGATGAAGGCCACACTCATCGAGCCGGGGGGCAC CTTGTTAACAGGGTTGGATGTCCTGATAAGAAAGCTAGACGAGAGCAAGCATCCGTTGAACCGGGTTTCAAAGGTGTCAGATGAGCTCCAAAATGCTCGA AACTGGATGGCGGGGAAGAAAGGAGAGATCAAGCATTTGAAGGAGAACGTGGATGATCTCACGATGCAGTTGAGCGACAAAGAAGGGAAGGTGTTGGAGC TCGAAGCGAGACTAACCATGGTGTTGACACTGGCGAGCGAGGAAGAGGAGGAGATTGTTGGTTTGATGAGGAAGGTGAAAAGGTTGGAGCAAGAGTTGAG AGGTAAAGAAGAGACAATAATGGGGTTTGGAGAAGAGAAGAAGGAAGCCATTAGACAGCTTTGTATGTTGACCGATTACCATCGAGATCGCTATGATCAT CTTAGGCGGACCATTTCCGTAATGAAGGTTAAGCACAATGCACCGTCGAGCGCCTAG
AA sequence Show only first row Show all	>Lus10032360 pacid=23168569 polypeptide=Lus10032360 locus=Lus10032360.g ID=Lus10032360.BGIv1.0 annot-version=v1.0 MGETQQENDEKEHVNLEVPSTMVKVDGDSHGSRGVVEVKELEGQLIANKFEMESLRKEKREMELLLERKVSEVNELQSQLIEIKSQCSAREVEEEEKEDD NKEVASISKSMKDNEEKYTSRIEDLVTEVTSLQTEVASLHNMKQDIELKLDEKVTEVTECGERNLQLSARISEVEHILETKVDEKDSILKEMRDNGEGMR SRIENLIAKVATLETEVEYATSKKKDIEAQMEVEVAEAKELKDINEELHVQILDLESTLKETSRLVRKLKNNESKLTGRIAELTGQVTQMSDRTFELEQL LSDREGQVISKVASMEITNLKEQITRLQQELDSSSSNVSTEKPHQIITTLKEPDNQESSGSQLETTLQPIRHLSMESPKVKMMESNKTLERKMEELAEQY QMRMENHIRLLRQRVKVAEQIHNETKDHYKEIKEELVQENKELHDKVVEFEDALKRMKATLIEPGGTLLTGLDVLIRKLDESKHPLNRVSKVSDELQNAR NWMAGKKGEIKHLKENVDDLTMQLSDKEGKVLELEARLTMVLTLASEEEEEIVGLMRKVKRLEQELRGKEETIMGFGEEKKEAIRQLCMLTDYHRDRYDH LRRTISVMKVKHNAPSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64320			myosin heavy chain-related (.1...		Lus10032360 [exp]	0	1

Compare expression of checked genes

Lus10032360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.