Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41790 214 / 6e-59 CIP1 COP1-interactive protein 1 (.1) AT1G64330 143 / 3e-36 myosin heavy chain-related (.1) AT1G03080 56 / 9e-08 kinase interacting (KIP1-like) family protein (.1) AT2G30500 53 / 5e-07 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 52 / 7e-07 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT3G22790 48 / 2e-05 Kinase interacting (KIP1-like) family protein (.1) AT4G02710 47 / 6e-05 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 45 / 0.0001 kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033945 [exp] 1019 / 0 AT5G41790 309 / 8e-86 COP1-interactive protein 1 (.1) Lus10032362 [exp] 91 / 8e-19 AT5G41790 275 / 7e-79 COP1-interactive protein 1 (.1) Lus10014687 [exp] 56 / 7e-08 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 56 / 1e-07 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 53 / 6e-07 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10034448 [exp] 52 / 2e-06 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10019111 [exp] 51 / 2e-06 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10039359 [exp] 51 / 4e-06 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10033944 [exp] 46 / 9e-05 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094200 [exp] 391 / 2e-123 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1) Potri.003G137400 [exp] 223 / 7e-62 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.003G137300 [exp] 81 / 8e-16 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.001G094332 [exp] 59 / 4e-10 AT1G64320 63 / 4e-12 myosin heavy chain-related (.1) Potri.013G158100 [exp] 63 / 5e-10 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 58 / 1e-08 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G049600 [exp] 57 / 5e-08 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 56 / 8e-08 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 55 / 1e-07 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 55 / 1e-07 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10032361 pacid=23168589 polypeptide=Lus10032361 locus=Lus10032361.g ID=Lus10032361.BGIv1.0 annot-version=v1.0 ATGACGAAGCATCGTTGGAAGGAATCTGTCAAATCCTTTTTTGGGAGCCACATCGATCCAGAGAAAGACGAGCAGCTGCAAGGCAGTAAAGAAGAATTCG ACGATAAATTGAAAAGGATCTTGGAGCTAATTAACGAAGAAGATTCTGAAGTGGAAAGCTCCAAAAGAAAGCCTCTCGTGGACTTAATTGAGGATTTTCA CAGTCAGTATGAATCGTTATATTCCCGATACGATCATCTTACAGGAGAACTGAGGAAGAAATTTCATGGGAAGAAGAGGGGGTCGGACTCCTCTTCTTCA TCTAGCTCAGACTCGGATTCCGATGACGATTCAAAGGACAAAAGCGGCAAAAATGGACGACTTAAAACAGGCAAACTAACTGACGGCATTAAGAAAGAAC TTGAAACCGCCAGTCTTGAAGTTGCTGAATTGAAGGGTAAGGTTGCTGCTGCAACCGAAGAAACGGATGCGTTATATCTCGAGTATCAATCAGCATTGAG CAAGATTGAAGAGGCAGAAGCGATTGTCAAAAGCATGAAGGTTGAATTAGAGACACTAAATGCCGAAAAAGTGAAAATTATCGTCGAGAACGAAGAACTG ACACAGAACCTCTATAAGGCTGGCAAGACAGGAGCAGAACTGAATAAAAGATTAGAAGATATAGCCAAAGAGAAAGAAGGTTTGATTGCAGAGAAAGCAG CTCTCCTGGAAAGGATTGAAGAAGAAGAGAAGATCAAAGGAGAATTAAGGATGGCGAGTGATAGGCTGGCAGATGAGAGAGTGGTTCTTTCCAAAGAACT TGAAAGTCTCAAGGGCGAAATTTCCACATTAAACGAGAAACTGAAATCATCAGAGGTGGTTGTGTCGAATTTGACCCAGAATTCAACAGTTGCAGAGGAA GAGAAAAAATCTATGGCGTCCGAAATCTCTGTATTAAACCAGAAGTTGGAAGAGATGAAATTAGAGAAGGATAGTCTCATTTCCGAGAAGGAGACTGCAA CGCAGAGAATCCTGGAAGAAGAGAAGGTCACAGCCGATCTAAGGGATTTGGCAGACAAGTTCCAAGGTGAGAATTCATCTCTTAAGCATGAACTAGAAAC CATTACAAATCAACTCATTGACACAAAACAGAAATTAGAATCTGTGGAGCAAATGGGTTCAGATTTTTCCGCGAAACTGAAAGTTGCTGAGGAAGAGAAT GCTTCTCTAACCTCAAGAGTTTCACAGACTCTAGATGAATTGCAGAGTACTCAAAACACCGTACAGGAACTCAAGACTCTATCAAGTCAGTTAGAAGAGA AATTGGATGGGAAGGAAAAAGAGGTTTCATCTCTTACGCAGAAGTACGACGCACTTGGTGTCGAATCCGCAAACCAGGTGACAGAATTGGAGTCACAGGT AGCCGCCATGGAATTGAAATTAGCTGCAATGTCTGAACAAAACAGAGAACTGGAATTGCAGGCCCAGGCCAAAATGGATGAAGCAAGCCAACTGGTGGAA GAGAATGGAAAACTACAGAGCCGAATTCTGGAACTTGAGAAGATATCAAAGGATAGAGAAGTTGAAATCTCAGAACTTGCAAGGAAACTTGAGGAAAACG AAAGAGAATCTTCAGCTAGATTTGTAAGCTTGACATCAGAGGTTACAACCCTACTGGCTGATTTGGAATACATGGGTGGTCAGAAAGCTGAGCTCGAAAA ACAGTTGATAAGCAACAGTGATGAAACATCGAACCAGTTGAAAGTCTACATCGATCAAGTCAATGAACTCCAACAGCAACTGCAGACTGTACACAGCCGA AAAGTTGAAATGGAAGACAGATGGCAAGCAGCAGCGAAGAGGTAG
AA sequence Show only first row Show all	>Lus10032361 pacid=23168589 polypeptide=Lus10032361 locus=Lus10032361.g ID=Lus10032361.BGIv1.0 annot-version=v1.0 MTKHRWKESVKSFFGSHIDPEKDEQLQGSKEEFDDKLKRILELINEEDSEVESSKRKPLVDLIEDFHSQYESLYSRYDHLTGELRKKFHGKKRGSDSSSS SSSDSDSDDDSKDKSGKNGRLKTGKLTDGIKKELETASLEVAELKGKVAAATEETDALYLEYQSALSKIEEAEAIVKSMKVELETLNAEKVKIIVENEEL TQNLYKAGKTGAELNKRLEDIAKEKEGLIAEKAALLERIEEEEKIKGELRMASDRLADERVVLSKELESLKGEISTLNEKLKSSEVVVSNLTQNSTVAEE EKKSMASEISVLNQKLEEMKLEKDSLISEKETATQRILEEEKVTADLRDLADKFQGENSSLKHELETITNQLIDTKQKLESVEQMGSDFSAKLKVAEEEN ASLTSRVSQTLDELQSTQNTVQELKTLSSQLEEKLDGKEKEVSSLTQKYDALGVESANQVTELESQVAAMELKLAAMSEQNRELELQAQAKMDEASQLVE ENGKLQSRILELEKISKDREVEISELARKLEENERESSARFVSLTSEVTTLLADLEYMGGQKAELEKQLISNSDETSNQLKVYIDQVNELQQQLQTVHSR KVEMEDRWQAAAKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032361 [exp]	0	1
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10041389 [exp]	10.5	0.8405
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016776 [exp]	10.9	0.8085
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Lus10005223 [exp]	11.0	0.8061
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	13.6	0.8722
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	19.9	0.8628
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10009720 [exp]	24.2	0.8625
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	25.9	0.8466
AT2G07360			SH3 domain-containing protein ...		Lus10008548 [exp]	26.4	0.8624
AT3G17920			Outer arm dynein light chain 1...		Lus10041989 [exp]	30.6	0.7999
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000459 [exp]	31.9	0.8618

Compare expression of checked genes

Lus10032361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.