Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41790 268 / 9e-77 CIP1 COP1-interactive protein 1 (.1) AT1G64330 107 / 5e-24 myosin heavy chain-related (.1) AT5G41780 77 / 2e-14 myosin heavy chain-related (.1) AT1G64320 67 / 3e-11 myosin heavy chain-related (.1) AT5G05180 47 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033945 [exp] 1096 / 0 AT5G41790 309 / 8e-86 COP1-interactive protein 1 (.1) Lus10033944 [exp] 116 / 5e-27 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1) Lus10032360 [exp] 102 / 2e-22 AT1G64320 164 / 5e-44 myosin heavy chain-related (.1) Lus10032361 [exp] 90 / 2e-18 AT5G41790 234 / 1e-65 COP1-interactive protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137400 [exp] 458 / 3e-143 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.001G094200 [exp] 426 / 5e-136 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1) Potri.003G137300 [exp] 189 / 5e-51 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.001G094266 [exp] 69 / 2e-13 AT1G64320 65 / 1e-12 myosin heavy chain-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032362 pacid=23168500 polypeptide=Lus10032362 locus=Lus10032362.g ID=Lus10032362.BGIv1.0 annot-version=v1.0 ATGGATCAAGTCAGTGAACTGCAACAGCAACTGCAATCTGTAGACAGCCAAAAAGCTGAACTAGAAATCCAGCTCCAGAACAGGATTGCTGAAATTTCAG ATTATCTGATACAGATAGAAAAACTGAAGGAAGATGTAGCTGTCAAGGCTGAAGATCATCAGAAAGCACTGCAAGAATTGGAATCAATGAGTGGTCAGAA AGCGGAACTCGAAAAACAGATGACCAGCAACAGCGAAGAAGCATCTAACCAGTTGAAGGTCTTTATGGATCAAGTCAACGAACTGCAACAGCAACTGCAG TCTGTAGACAGCCAAAAAGTTGACCTAGAAGTCCAGCTCCAGAACAAGATTGCTGAAAATTCAGAAGCTTCGACACAGATAGAAAAACTGAAAGAAGAAA TAGCAGGCAAGGTTATGGATCATCAGAAAGTACTGGCAGATTTGGAATCTATGAGTGGTCAGAAAGCAGAAATCGAAAAACAGATGACCAGCACCAGCGA GGAATCATCAAATCAGTTGAAGGTCTTCATGGATCAAGTCCATGAACTGCAACTTCAACTGCAGTCTGTACACAGCCGAAAGGTTGAATTGGAAGTCCAA CTCCAGAATAAGACAGAAGAAAATTTGGAATCTCTGATACAGATAGAAAAGCTGAAGGAAGAAGTAACTTCCAAATCTGAAGATCATGAGAAATTACAGA AGGAGAAAGATCATCTGACGGAAAAGATAAAGGAACTGATGTTGGAAATGGAGACTCTAGGCAACCAGAAGAACAATCTCGAAGAGCAAGTAAGACATCA CGTCGAAGAGATCGCATCTCTGAAAGATGAAATGTTGGCTTTACACGACAAAGTTTCTGGAATGGACCAGACAATCTCAGAAAGAGGGCTGGAGTTCTCT GCCCTCCATGAGAAACACGCCAGTAGGGAGACTGAAGTTTCTGCTGAAATAATGTCTCTCAAGGAACATGCACGCAATCTACAACAAGAACTAGATACGC TGCAGAATGAGAGGAACGACTTACAAACACAACTCGAAAAAGAGCAGAATGAATTTTCAGCAAAGTTGACGGAGATAGAAAATCAGAAGACCGAGCTGGC AATTCAGGTTGCTGATCTGCAGAAATTGCTGGATGAACAAGCTGAAGCTTACAAGAAACTAAGCGATGACTATAAACAAATAGAAGCTCTGTATGAGGAT AGTAAGGCTAATGCGGAATCAGCAGAAAAGAAGGCAGAGGATCTCGACAAACAAGTGGCTGAATTACTGGAGACAATCGAGAGTCAGAAGCGAGACATTG AATTCAAAGGAGAAGAGCTACGAAGTCTAGCCGACAAGAACAACAACATCGAAGTGAAACTTCGACTCTCGAGCCAGAAAGGCCGGGTGACCGACCAGTT ACTGAGCGAACAAGAGGAAACGTTCAGGAAAGAAGAAGCCAAACACAAGGAAAAGCAGAGAGAGCTTGAAGCAAGAATATCGTCTCTCTCCACTACTCTT GCTGTAACTAAAGAAGCTCATCGCAAAATGGTAACCGAACTCTCGGACGAACTTCACTGCGCCATTACAGGATTGGACACTCTGTCCTCCAGATTCGACG AGGACTGCAACAGGTATCAGCACCGCGTCATGGAGATGTCTCGCGAGGTTCAGATCGCCAAGGGCTGGGTGGTCGCCATGAATAAGAAGATTGAGAAGTT GAAAAGGGAAGCGAACAGCTCAGCTTTACAATTGCAGCACGCAAGGGAACAAGTATCTGGACTGAAGATAGCAGTAGAGGAGTTGCAGGCCAAAGCAAAC AGAGAGGAAACAGAGAAGCAGAATCTCACGAAAGCCATAGCAGCCATGGAAGCAAGCATGAAGGAGAAAGATGAAGGAATATTCCACTTAGGAGAAGAGA AACGAGAAGCCATACGGCAGCTTTGCATTTTGATTGATTATCACCGCGTCCGATACGACGGCATAATCGAAAGCTTACTCTCCAAAGTTCCAGGCAGACG GCAGAGGGCAACTGCTTAG
AA sequence Show only first row Show all	>Lus10032362 pacid=23168500 polypeptide=Lus10032362 locus=Lus10032362.g ID=Lus10032362.BGIv1.0 annot-version=v1.0 MDQVSELQQQLQSVDSQKAELEIQLQNRIAEISDYLIQIEKLKEDVAVKAEDHQKALQELESMSGQKAELEKQMTSNSEEASNQLKVFMDQVNELQQQLQ SVDSQKVDLEVQLQNKIAENSEASTQIEKLKEEIAGKVMDHQKVLADLESMSGQKAEIEKQMTSTSEESSNQLKVFMDQVHELQLQLQSVHSRKVELEVQ LQNKTEENLESLIQIEKLKEEVTSKSEDHEKLQKEKDHLTEKIKELMLEMETLGNQKNNLEEQVRHHVEEIASLKDEMLALHDKVSGMDQTISERGLEFS ALHEKHASRETEVSAEIMSLKEHARNLQQELDTLQNERNDLQTQLEKEQNEFSAKLTEIENQKTELAIQVADLQKLLDEQAEAYKKLSDDYKQIEALYED SKANAESAEKKAEDLDKQVAELLETIESQKRDIEFKGEELRSLADKNNNIEVKLRLSSQKGRVTDQLLSEQEETFRKEEAKHKEKQRELEARISSLSTTL AVTKEAHRKMVTELSDELHCAITGLDTLSSRFDEDCNRYQHRVMEMSREVQIAKGWVVAMNKKIEKLKREANSSALQLQHAREQVSGLKIAVEELQAKAN REETEKQNLTKAIAAMEASMKEKDEGIFHLGEEKREAIRQLCILIDYHRVRYDGIIESLLSKVPGRRQRATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032362 [exp]	0	1
AT1G60010			unknown protein		Lus10029193 [exp]	7.3	0.7518
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	7.5	0.7442
AT1G06750			P-loop containing nucleoside t...		Lus10021225 [exp]	9.5	0.7297
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	13.0	0.7150
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	15.4	0.7537
AT1G67190			F-box/RNI-like superfamily pro...		Lus10004875 [exp]	17.7	0.6625
AT3G59490			unknown protein		Lus10013685 [exp]	18.5	0.7208
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	20.6	0.7408
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023910 [exp]	21.6	0.7191
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	23.7	0.6954

Compare expression of checked genes

Lus10032362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.