Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 164 / 1e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 163 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 162 / 1e-46 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 161 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40410 158 / 5e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11460 153 / 5e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46790 153 / 5e-44 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G13410 150 / 8e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 152 / 9e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 150 / 2e-42 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033946 [exp] 309 / 3e-103 AT4G18750 410 / 1e-132 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018265 [exp] 152 / 5e-47 AT5G16860 192 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 159 / 1e-45 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 156 / 9e-45 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 155 / 2e-44 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10037362 [exp] 154 / 4e-44 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 155 / 5e-44 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 154 / 5e-44 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 151 / 5e-44 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369900 [exp] 166 / 9e-49 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G053600 [exp] 163 / 1e-47 AT3G04750 759 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 162 / 2e-47 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 162 / 3e-47 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 159 / 8e-46 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 157 / 9e-46 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 157 / 2e-45 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 157 / 5e-45 AT3G22690 582 / 0.0 unknown protein Potri.013G103600 [exp] 155 / 6e-45 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 156 / 1e-44 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032363 pacid=23168541 polypeptide=Lus10032363 locus=Lus10032363.g ID=Lus10032363.BGIv1.0 annot-version=v1.0 ATGCACGGGCATGGCCAGGCAGCATTGAAGCTTCTACAGGAGATGAACTGGTTAGGAATCAATCCCGATTCTGTTATGTTCACTTCTGTTCTATCTGGGT GTGACCATTCTGGTCTTGTGGAAGAGGGTCTTAAGCTCTTTGAGAGCATGACAAGAGAATATGGATTCATTCCCAGGATGGAACATTATTCTTGCGTTGT TAACATGCTGGCACGTGCCAGTAGGTTAGAAGCTGCTACATCTTTCATTCATCAGATGCCATTACAGCCTGATAAGTCTATCTGGGGAGGCTTACTGGCG GCTTGCCTTGAACAACAAAACGTTGACGTTGGGAAGCTGGCGGCTGAACAGTTGGTCCATCTCGAACCTCGGTGTTCTGGACATTATGTCACTTCGGCTA ACTTGTACGCTGAAGCTGGCAATTGGTGTGATGCAGTAAGGGTGAGAAAGGAAATGGAAGTTAGAGGGTTGGTTAAGACGTCTGGGCAGAATGGATAA
AA sequence Show only first row Show all	>Lus10032363 pacid=23168541 polypeptide=Lus10032363 locus=Lus10032363.g ID=Lus10032363.BGIv1.0 annot-version=v1.0 MHGHGQAALKLLQEMNWLGINPDSVMFTSVLSGCDHSGLVEEGLKLFESMTREYGFIPRMEHYSCVVNMLARASRLEAATSFIHQMPLQPDKSIWGGLLA ACLEQQNVDVGKLAAEQLVHLEPRCSGHYVTSANLYAEAGNWCDAVRVRKEMEVRGLVKTSGQNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10032363 [exp]	0	1
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	13.2	0.7226
					Lus10017572 [exp]	13.7	0.7515
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	16.9	0.7402
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	19.5	0.7482
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10037009 [exp]	19.5	0.7054
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	20.3	0.7337
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	35.9	0.7324
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	36.7	0.7276
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	38.8	0.7210
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	39.6	0.7162

Compare expression of checked genes

Lus10032363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.