Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01100 514 / 0 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 179 / 5e-52 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G61810 156 / 8e-45 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G53940 154 / 1e-43 Mitochondrial substrate carrier family protein (.1) AT2G37890 152 / 2e-43 Mitochondrial substrate carrier family protein (.1) AT5G07320 155 / 3e-43 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT1G14560 147 / 1e-41 Mitochondrial substrate carrier family protein (.1) AT4G26180 144 / 3e-40 Mitochondrial substrate carrier family protein (.1) AT5G01500 143 / 4e-39 TAAC thylakoid ATP/ADP carrier (.1) AT3G55640 139 / 3e-38 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033947 [exp] 617 / 0 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 600 / 0 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 590 / 0 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032522 [exp] 172 / 7e-50 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 172 / 2e-49 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 167 / 1e-47 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 166 / 3e-47 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 154 / 2e-43 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10013527 [exp] 152 / 5e-43 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094100 [exp] 557 / 0 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 548 / 0 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 535 / 0 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 522 / 0 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.012G110700 [exp] 171 / 4e-49 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 167 / 2e-47 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 161 / 1e-46 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 155 / 2e-44 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 154 / 6e-44 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 151 / 8e-43 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10032364 pacid=23168588 polypeptide=Lus10032364 locus=Lus10032364.g ID=Lus10032364.BGIv1.0 annot-version=v1.0 ATGGCTTCCGAAGATGTGAAGACTAGTGGGGAGGCCGCTGTTTCGACGATCGTCAATCTCGCTACTGAGGAGGCCAAACTAGCTCGTGAAGGTGTCAAGA CTCAGGGCCCCGCTTTCCTCAGCATCTGCAAATCCCTCGTCGCCGGTGGTGTCGCCGGAGGAGTGTCCCGCACAGCTGTTGCTCCACTAGAAAGACTAAA AATTCTACTCCAGGGGTTGAAATACATTTGGAGAACCGAGGGTTTCAGAGGATTGTTTAAAGGAAACGGCACGAACTGTGCTCGAATTGTACCAAATTCA GCAGTCAAGTTCTTCAGTTATGAGAAAGCCTCCGAGGGTATTCTATGGTTCTATAGGCACCAAACTGGAAAAGATGATGCACAGCTTACTCCTGTTTTGC GTCTGGGAGCTGGTGCTTGTGCTGGTATAATCGCCATGTCAGCTACTTACCCGATGGACTTGGTTAGAGGTCGCCTAACTGTCCAGACAGATCAGTCTCC TCGTCAGTACAGAGGTATTGCTCATGCTCTTAGAACTGTCCTGAAGGAAGAAGGGCCTCGTGCATTATACAAGGGCTGGCTTCCTTCCGTCATAGGAGTT GTTCCGTATGTGGGTCTCAACTTCGCCGTCTATGAATCGCTTAAAGACTGGTTGCTGAAGTCCAACACATTTAACCTGGTCGAAAACAACGAACTGAGTG TAATAACTAGGCTTGCATGTGGAGCCGCGGCTGGAACTGTAGGCCAGACAGTTGCTTATCCACTGGATGTTATTCGACGAAGGATGCAAATGGTAGGGTG GAAGGATGCTGCTTCAGTTGTCACCGGTGATGGAAGGGGCAAAGCACCCCTTGAGTACACCGGTATGGTTGATGCCTTCAGGAAAACAGTTCGATATGAG GGTTTCGGAGCACTGTACAAGGGTTTAGTCCCCAATTCAGTAAAGGTTGTTCCATCCATTGCCCTTGCATTTGTGTCATACGAGATGGTGAAAGATGTAC TCGGGGTCGAAATGAGGATATCTGACTGA
AA sequence Show only first row Show all	>Lus10032364 pacid=23168588 polypeptide=Lus10032364 locus=Lus10032364.g ID=Lus10032364.BGIv1.0 annot-version=v1.0 MASEDVKTSGEAAVSTIVNLATEEAKLAREGVKTQGPAFLSICKSLVAGGVAGGVSRTAVAPLERLKILLQGLKYIWRTEGFRGLFKGNGTNCARIVPNS AVKFFSYEKASEGILWFYRHQTGKDDAQLTPVLRLGAGACAGIIAMSATYPMDLVRGRLTVQTDQSPRQYRGIAHALRTVLKEEGPRALYKGWLPSVIGV VPYVGLNFAVYESLKDWLLKSNTFNLVENNELSVITRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAASVVTGDGRGKAPLEYTGMVDAFRKTVRYE GFGALYKGLVPNSVKVVPSIALAFVSYEMVKDVLGVEMRISD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032364 [exp]	0	1
AT4G11630			Ribosomal protein L19 family p...		Lus10041948 [exp]	5.1	0.7041
AT4G22720			Actin-like ATPase superfamily ...		Lus10029108 [exp]	22.4	0.6893
AT3G12350			F-box family protein (.1.2)		Lus10018673 [exp]	26.4	0.6474
AT3G22430			unknown protein		Lus10041204 [exp]	33.0	0.6847
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009023 [exp]	33.6	0.6937
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033641 [exp]	42.6	0.6774
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033640 [exp]	52.5	0.6620
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10029793 [exp]	52.8	0.6640
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10015864 [exp]	58.1	0.6651
AT2G44020			Mitochondrial transcription te...		Lus10004535 [exp]	61.5	0.6606

Compare expression of checked genes

Lus10032364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.