Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01100 543 / 0 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 177 / 5e-51 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G61810 162 / 1e-46 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G53940 162 / 1e-46 Mitochondrial substrate carrier family protein (.1) AT3G55640 158 / 2e-45 Mitochondrial substrate carrier family protein (.1) AT5G07320 160 / 5e-45 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT4G26180 155 / 3e-44 Mitochondrial substrate carrier family protein (.1) AT2G37890 153 / 3e-43 Mitochondrial substrate carrier family protein (.1) AT5G01500 152 / 1e-42 TAAC thylakoid ATP/ADP carrier (.1) AT1G14560 149 / 8e-42 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033948 [exp] 643 / 0 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 627 / 0 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 588 / 0 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10021497 [exp] 170 / 1e-49 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 170 / 5e-49 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 171 / 8e-49 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 168 / 6e-48 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 167 / 2e-47 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10013527 [exp] 159 / 2e-45 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094100 [exp] 584 / 0 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 578 / 0 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 570 / 0 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 557 / 0 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.010G197400 [exp] 171 / 4e-50 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 171 / 5e-49 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 166 / 4e-48 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 165 / 4e-48 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 165 / 5e-48 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 162 / 2e-45 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10032365 pacid=23168476 polypeptide=Lus10032365 locus=Lus10032365.g ID=Lus10032365.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAGGATGTGAAGACGAGTGGGGAGGCTGCTGTTTCGACGATCGTCAATCTCGCTACCGAGGAGGCCAAGCTGGCTCGTGAAGGTGTCAAGA CTCAGGCCCCCGCTTTCCTTAGTATCTGCAAATCCCTCGTCGCCGGTGGTGTGGCCGGAGGAGTGTCCCGCACAGCTGTTGCTCCACTAGAAAGATTAAA AATTCTACTCCAGGTCCAAAATCCACACAGTATAAAATACAATGGTACAATTCAGGGCCTGAAGTACATTTGGAGAACTGAGGGTTTCAGAGGATTGTTT AAAGGAAATGGTACCAACTGCGCTCGGATTGTACCAAATTCAGCAGTCAAGTTCTTTAGTTACGAGGAAGCCTCTAAGGGTATTTTATGGTTATACAGGC GCCAAACTGGAAAAGATGATGCACAGCTTACTCCTGTTTTACGTCTTGGTGCTGGTGCTTGTGCTGGTATAATTGCTATGTCCGCAACTTATCCGATGGA CATGGTTAGAGGTCGCTTAACTGTCCAGACAGATAAGTCTCCTTGTCGGTACAGAGGTATAGCCCACGCCCTTAGGACTGTCCTAAAGGAAGAAGGGGGC CGTGCATTATACAAAGGCTGGCTTCCTTCGGTTATAGGAGTTGTACCGTATGTGGGTCTCAACTTTGCTGTTTATGAATCCCTAAAAGACTGGTTGCTGA AGTCCAACGCATTTGACCTGGTCGAAAACAATGAACTGAGTATAATGACAAGGCTTGCATGTGGAGCCGCGGCTGGAACTGTTGGCCAGACAGTTGCTTA TCCACTCGATGTCATTCGACGAAGGATGCAAATGGTAGGGTGGAAGGATGCTGCTTCAGTTGTAACTGGGGATGGAAGGGGCAGAGCACCCCTCGAGTAC ACCGGTATGGTTGATGCCTTCAGGAAAACAGTTCGGTACGAGGGTTTTGGAGCATTGTACAAGGGTTTAGTCCCCAATTCAGTAAAGGTTGTTCCATCCA TTGCCATTGCATTTGTGTCATACGAGATGGTGAAAGGCGTTCTTGGCGTCGAATTGAGGATATCCGACTAA
AA sequence Show only first row Show all	>Lus10032365 pacid=23168476 polypeptide=Lus10032365 locus=Lus10032365.g ID=Lus10032365.BGIv1.0 annot-version=v1.0 MASEDVKTSGEAAVSTIVNLATEEAKLAREGVKTQAPAFLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLF KGNGTNCARIVPNSAVKFFSYEEASKGILWLYRRQTGKDDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTDKSPCRYRGIAHALRTVLKEEGG RALYKGWLPSVIGVVPYVGLNFAVYESLKDWLLKSNAFDLVENNELSIMTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAASVVTGDGRGRAPLEY TGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVSYEMVKGVLGVELRISD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032365 [exp]	0	1
AT1G53210			sodium/calcium exchanger famil...		Lus10042848 [exp]	2.0	0.7766
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	11.4	0.7773
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10000093 [exp]	20.4	0.7583
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030196 [exp]	23.7	0.7318
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10010025 [exp]	25.7	0.7573
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	26.3	0.7586
AT1G26761			Arabinanase/levansucrase/inver...		Lus10037153 [exp]	30.1	0.7584
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10037947 [exp]	31.2	0.7444
AT1G30700			FAD-binding Berberine family p...		Lus10038439 [exp]	38.9	0.7294
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	43.2	0.7328

Compare expression of checked genes

Lus10032365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.