Plant FIBer expression Database

Lus10032366 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61660 51 / 5e-09 unknown protein
AT2G46375 39 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033949
[exp]
134 / 2e-41 AT3G61660 59 / 5e-12 unknown protein
Lus10005152
[exp]
45 / 1e-06 AT3G61660 58 / 1e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G094000
[exp]
60 / 1e-12 AT3G61660 55 / 1e-10 unknown protein
Potri.003G137600
[exp]
59 / 1e-12 AT3G61660 57 / 1e-11 unknown protein
Potri.002G168300
[exp]
49 / 5e-08 AT3G61660 57 / 3e-11 unknown protein
Potri.014G095600
[exp]
47 / 1e-07 AT3G61660 65 / 5e-14 unknown protein
Potri.001G093500
[exp]
37 / 0.0008 AT5G41810 135 / 1e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10032366 pacid=23168699 polypeptide=Lus10032366 locus=Lus10032366.g ID=Lus10032366.BGIv1.0 annot-version=v1.0
ATGGCGGTAGTATGGGATTGCGGCAGCCCGTTGTACGACTCCTACGAGATTGCTTCACTGGGCCACCTCATCGATCGACACTCCATGTCCCTACCTTCCT
CGCCGGCGCCGTTGCTCTCTGCCCCCACCGTCGACTCGAAACAGAGGCGGAGTGGTTTCGGAGGGGAGAAGAAGATGGGTTTGGGTCCGTTGTCGAGATT
GGTAAGGAGGTGGAATAGTATCATCATTATAAGTAGTAGTAGTAGTAGTAGTAGTAGTAAGAGTGGGATCAGTAATTGGTGTACGAAGGGTGCTACTAAG
CAATCTGCAGGGATACGTTGGATGAGTTGCTTCTTCTGCAAGGGCAAAGTTGCTGATGCCAAAGAAATGTTGTAA
AA sequence
>Lus10032366 pacid=23168699 polypeptide=Lus10032366 locus=Lus10032366.g ID=Lus10032366.BGIv1.0 annot-version=v1.0
MAVVWDCGSPLYDSYEIASLGHLIDRHSMSLPSSPAPLLSAPTVDSKQRRSGFGGEKKMGLGPLSRLVRRWNSIIIISSSSSSSSSKSGISNWCTKGATK
QSAGIRWMSCFFCKGKVADAKEML

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61660 unknown protein Lus10032366
[exp]
0 1
AT3G22104 Phototropic-responsive NPH3 fa... Lus10018499
[exp]
4.7 0.7723
AT4G28040 nodulin MtN21 /EamA-like trans... Lus10019969
[exp]
7.9 0.7687
AT4G37080 Protein of unknown function, D... Lus10021756
[exp]
11.1 0.7316
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Lus10027156
[exp]
13.0 0.6828
AT5G14210 Leucine-rich repeat protein ki... Lus10032058
[exp]
21.6 0.7584
AT5G53200 MYB TRY TRIPTYCHON, Homeodomain-like s... Lus10038822
[exp]
23.9 0.6645
AT5G35670 IQD33 IQ-domain 33 (.1) Lus10000919
[exp]
24.2 0.6951
AT2G03500 GARP Homeodomain-like superfamily p... Lus10027927
[exp]
25.3 0.6825
AT5G14210 Leucine-rich repeat protein ki... Lus10032059
[exp]
29.3 0.7304
AT5G02440 unknown protein Lus10025345
[exp]
30.9 0.7258

Lus10032366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.