Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11090 518 / 0 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT4G23790 494 / 2e-173 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT4G01080 409 / 6e-140 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT1G01430 405 / 3e-138 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT5G15890 313 / 2e-101 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT5G15900 299 / 6e-97 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT1G70230 296 / 3e-96 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT3G28150 263 / 4e-83 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT5G51640 246 / 8e-76 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 241 / 2e-73 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033950 [exp] 895 / 0 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10029454 [exp] 445 / 5e-154 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10005952 [exp] 436 / 2e-151 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10034087 [exp] 311 / 1e-101 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 301 / 9e-98 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10029188 [exp] 291 / 2e-93 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10010704 [exp] 288 / 3e-92 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10024167 [exp] 275 / 1e-87 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10039438 [exp] 262 / 1e-82 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137800 [exp] 627 / 0 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.001G093800 [exp] 625 / 0 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.014G095800 [exp] 525 / 0 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.002G168400 [exp] 517 / 0 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105700 [exp] 320 / 4e-105 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.008G146100 [exp] 300 / 2e-97 AT1G70230 494 / 2e-174 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.010G095700 [exp] 299 / 4e-97 AT1G70230 481 / 2e-169 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.017G073700 [exp] 283 / 4e-91 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.004G105600 [exp] 283 / 6e-91 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105500 [exp] 282 / 1e-90 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10032367 pacid=23168549 polypeptide=Lus10032367 locus=Lus10032367.g ID=Lus10032367.BGIv1.0 annot-version=v1.0 ATGAAGCGGATTCTGAACCTCTGGTCGCTGAACAAGCAGAACCAGTGGATATTGAAGTTGGGAATCTCGGTCCTCGTAGTGGGCCTCGCTTTCCACCTCC TCTTCAATCAGTCCTCCAGATTCGAACCTCAATTGGAAGATGTAGCTTCTTCCTACATTGCCGCTGGTAGAGCTGATGTATTGATCTCCCCATCTGCTTC TGCTGCTGCTTCAGCTGAAACGTCGTCCCATCCACCGCCGGATTTTGTTTCCGATGATATCCCAATCCCACCCCCTGCTCCCCAGCCTTCTCCTTCTTCT TCTTCTGCTGCTGCTGCTACTGAGGGCTCCAATTCAACTATAGCTGTAGATGGACGACCGGATCCAGATGAAAATGAGGCGCCGGATGATGGAAAATGCA ATCTGGTTGTTGGTGATTGGATTCCTGAACCATCTGGTCCAATGTACACGAATGCTACATGCAAATTCATTGATGGCCATCAGAACTGTATGATGAATGG GCGCCCTGATTCTGGTTATATGTACTGGAGGTGGAAACCCCGGCGGTGTGACTTGCCTGCATTCGATGCACTGCGATTTCTGCACTTGATGAGGGACAAA TCGTGGGGGTTGATTGGCGATTCTATTTCACGCAACCATGTCGAGTCGCTGCTGTGCATGCTTTCTACGGTCGAACAACCTGTGGAAGTTTACCACGACG AGGAATACAGATCCAAACGATGGCACTTCCCTACTTACAACTTCACCGTATCAAACCTTTGGTCCCCCTTCCTGGTACAGGCAGCCATCTTCGAAGACTA CAATGGAGTCTCAACATCCGAGGTCCAATTACAGCTCGACAAACTCGACAAGAGTTGGATAGATGTTTACCAGAGCTTGGACTACATTATAATCTCAACT GGGAAATGGTTCCTGAAGGCCGCCGTATACCACGAAAACAACACAATTGTCGGCTGCCACATCTGCCCTCAAGGAAAGAACCTCACAGAGACCGGGTTCG ACTCTGCGTACGAGAAAGCGCTGAGCTTCGCGTTGAACTCCATCGTAGGATCGAAGCACAAGGGACAAATCTTCTTAAGGACATCCACACCAGACCATTT CCAGAGCGGCGAGTGGCACAATGGAGGGAACTGTCCGCAGACTGGACCAGCTAAAGAAGGCGAATTTGCTATGAAGGAGGTTAACAAGATTTTGAGAAGA GTGGAGCTGGCTGAGTTTGATAAAGCCGCCACGAAAGCAGCTGAATTCGGGGTGAACCTGAAACTGATTGATTTCACCAACATGCTGTTGCCAAGGCCTG ATGGGCACCCCGGTGCTTACAGACAGTTCCAGCCGTTTGCAGAAGACAAGAACGCGACGGTTCAGAATGACTGCCTGCATTGGTGCTTGCCCGGCCCGAT TGATTACTTGAATGACGTGATCATGGAGATGGTGGTGAACGGTTGA
AA sequence Show only first row Show all	>Lus10032367 pacid=23168549 polypeptide=Lus10032367 locus=Lus10032367.g ID=Lus10032367.BGIv1.0 annot-version=v1.0 MKRILNLWSLNKQNQWILKLGISVLVVGLAFHLLFNQSSRFEPQLEDVASSYIAAGRADVLISPSASAAASAETSSHPPPDFVSDDIPIPPPAPQPSPSS SSAAAATEGSNSTIAVDGRPDPDENEAPDDGKCNLVVGDWIPEPSGPMYTNATCKFIDGHQNCMMNGRPDSGYMYWRWKPRRCDLPAFDALRFLHLMRDK SWGLIGDSISRNHVESLLCMLSTVEQPVEVYHDEEYRSKRWHFPTYNFTVSNLWSPFLVQAAIFEDYNGVSTSEVQLQLDKLDKSWIDVYQSLDYIIIST GKWFLKAAVYHENNTIVGCHICPQGKNLTETGFDSAYEKALSFALNSIVGSKHKGQIFLRTSTPDHFQSGEWHNGGNCPQTGPAKEGEFAMKEVNKILRR VELAEFDKAATKAAEFGVNLKLIDFTNMLLPRPDGHPGAYRQFQPFAEDKNATVQNDCLHWCLPGPIDYLNDVIMEMVVNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	0	1
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	1.7	0.8989
AT3G46520		ACT12	actin-12 (.1)		Lus10029286 [exp]	2.8	0.8705
AT2G20820			unknown protein		Lus10033715 [exp]	2.8	0.8805
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10007870 [exp]	3.0	0.8739
AT5G08200			peptidoglycan-binding LysM dom...		Lus10040979 [exp]	6.3	0.8478
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	7.5	0.8558
AT3G57400			unknown protein		Lus10042067 [exp]	8.4	0.8323
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	10.5	0.8605
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10022947 [exp]	10.8	0.8418
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10008402 [exp]	11.3	0.8539

Compare expression of checked genes

Lus10032367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.