Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26600 701 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55920 626 / 0 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G13180 107 / 2e-24 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT5G26180 92 / 3e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G40000 82 / 6e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G22400 81 / 9e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G06560 69 / 7e-12 NOL1/NOP2/sun family protein (.1) AT4G17590 71 / 5e-10 unknown protein AT5G66180 46 / 4e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023095 [exp] 1015 / 0 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016622 [exp] 106 / 5e-24 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10020217 [exp] 94 / 8e-20 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10026452 [exp] 81 / 7e-16 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026840 [exp] 80 / 3e-15 AT4G40000 954 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022523 [exp] 75 / 2e-14 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10025004 [exp] 76 / 3e-14 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007337 [exp] 59 / 1e-08 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10020761 [exp] 53 / 6e-07 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369600 [exp] 727 / 0 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G368500 [exp] 108 / 9e-25 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.007G096100 [exp] 82 / 5e-16 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G224000 [exp] 81 / 6e-16 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G204900 [exp] 66 / 6e-11 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.007G056800 [exp] 51 / 2e-06 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10032368 pacid=23168498 polypeptide=Lus10032368 locus=Lus10032368.g ID=Lus10032368.BGIv1.0 annot-version=v1.0 ATGGCACCAGCTATAGGTACGAAGAAGAAGGCCTCAAAGCCAACCAAATCTACACTTCATAAAAAGCAAAAGGCTGGTAACCTTTTCACTGAGAAACGCC GAAAGAAGGCCGCCATTTCTGACGATTCTGATGATTCCGAGGAAGAAATACCCCACCAGGAAGAGTTTTCCGAAGACGACGATGATGTCGGGCAAGGTTC TGCTTCTGGGTCTGACCTTCTCTCCGGGGATGATGATGATGGTGATGATGATCCTCTAGCAGATGATTTTCTCCAATCAGCTGATGACGAAGAAGAAGAA AATGAAGGCACCGATTCTGGTCCTGGTTCAGACTCGGATTCTGATGTAGATGACCTAGAGAAGAAGTCTCTGGCTATAGATATCCGCACAAGAAAGGAGC AGAAGGATGCCGATGATGAGGTCATAACCAACATTGCCGAGGAATCTGACGAGTTCAGGCTTCCTACCGATGAGGAGCTCGAAGCAGAGGCAAATAACCC TCCTGATCTTCAGAATCTCCAAAGAAGAATCAAAGAAATTGCTAGAGTGCTTTCAAATTTTACTGCTCTGAAGCAAGAAGGAGCTAGTAGGAAGGATTAC ATTGAACAGCTTAAGAAGGATCTAAGCTCGTATTATGGTTATAACGATTTCCTTATTGAAGTTTTGGTACAGATGTTTCCAGTTAATGAACTCTTGGAAC TTATTGAAGCTTTTGAAAAGCCAAGACCTATTTGCTTACGAACTAATACTTTAAAGACTAGAAGACGTGATTTGGCTGATGTTCTGTTGAATAGAGGAGT AAACTTAGATCCCTTGAGTAAGTGGTCAAAGGTCGGACTGGTTGTGTATGATTCTCAAGTGCCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTGTAC ATGCTACAAAGTGCAAGTTCCTTTTTGCCTGTCATGGCGCTGGCTCCTCAAGAAAAGGAGAAGATTGTCGATATGGCGGCCGCGCCTGGTGGTAAAACAA CATATATCGCGGCTCTAATGAAAAATACAGGAATGATTTATGCCAACGAGATGAAGGAACCAAGGCTTAAGTCACTGACTGCAAATTTGAATAGGATGGG GGTCTCAAACACCATAGTTTGTAACTATGATGGCAGAGAGTTGCCCAAGGTATTGGGTGTCAATACTGTTGATAGAGTATTGCTAGATGCTCCATGCAGT GGAACAGGGGTTATATCAAAAGATGAGTCAGTAAAGACATCCAAAAGCACAGACGATATACAAAAAAATGCACAACTACAAAAGCAATTAATACTGGATG CAATAGACTTGGTTAATGCAAATTCACAATCTGGTGGATATATTGTATATTCTACATGCTCCATGATGGTTGCTGAGAATGAAGCAGTCATTGATTATGC TCTGAAGAAGAGGCATGTTAAACTTGTACCATGTGGGCTTGATTTCGGCCGTCCGGGGTTTACGAAATTCAGAGAGCTCAGGTTTCATCAATCCTTAGAA AAGACTAGACGGTTCTATCCTCATGTAAACAACATGGATGGGTTTTTTGTAGCAAAGCTGAAGAAAGTTAGTAATACAATACCCTCCGGTGGAGCCTATA CAGCTGCTGAAGAGTCTGTTGAGGAAGCTCCTGTGGCTAGCAATAATGGCGATGTTGTGAAGGAAAGTGTGAAGCCTGTGAAGGAAGATGGTCCCAAGAA AAGTAATGCAGGTGCAAAAAAGAAGGTAGACGATAACGGTAAAGAGGCGGCGGCGACATCAAAACCAGCGGAGAAAAGAAAGAAAAGAAAGTTCCCATCC CAAGAGGAAATCGCGAAAGTCAGGGAGGAGAAGAGACAAAAGCTGAGGGAGGCAAAAAGAAAACCACAAGGGAGCAAGTAG
AA sequence Show only first row Show all	>Lus10032368 pacid=23168498 polypeptide=Lus10032368 locus=Lus10032368.g ID=Lus10032368.BGIv1.0 annot-version=v1.0 MAPAIGTKKKASKPTKSTLHKKQKAGNLFTEKRRKKAAISDDSDDSEEEIPHQEEFSEDDDDVGQGSASGSDLLSGDDDDGDDDPLADDFLQSADDEEEE NEGTDSGPGSDSDSDVDDLEKKSLAIDIRTRKEQKDADDEVITNIAEESDEFRLPTDEELEAEANNPPDLQNLQRRIKEIARVLSNFTALKQEGASRKDY IEQLKKDLSSYYGYNDFLIEVLVQMFPVNELLELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGLY MLQSASSFLPVMALAPQEKEKIVDMAAAPGGKTTYIAALMKNTGMIYANEMKEPRLKSLTANLNRMGVSNTIVCNYDGRELPKVLGVNTVDRVLLDAPCS GTGVISKDESVKTSKSTDDIQKNAQLQKQLILDAIDLVNANSQSGGYIVYSTCSMMVAENEAVIDYALKKRHVKLVPCGLDFGRPGFTKFRELRFHQSLE KTRRFYPHVNNMDGFFVAKLKKVSNTIPSGGAYTAAEESVEEAPVASNNGDVVKESVKPVKEDGPKKSNAGAKKKVDDNGKEAAATSKPAEKRKKRKFPS QEEIAKVREEKRQKLREAKRKPQGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10032368 [exp]	0	1
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10002624 [exp]	1.7	0.9533
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	5.3	0.9448
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	6.3	0.9343
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	7.7	0.9332
AT1G69070			unknown protein		Lus10019174 [exp]	10.7	0.9375
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	11.4	0.9227
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	12.0	0.9205
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	13.7	0.9200
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	14.5	0.9331
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019208 [exp]	16.2	0.9236

Compare expression of checked genes

Lus10032368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.